Sequence
atgc intronic sequence ATGC exonic sequenceGGGTACAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAGgtagctagcagaaattggctctctctgaatctgaatgttcactctttggttgtttttaattggtagtatctgaatctgaatgaccacatttgattttaat...
Basic information
species | Oryza sativa |
transcript | LOC_Os02g04030.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g04030.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G171349_T02 (Zea mays), 5'ss of exon 3
GGGTACAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAGgtagctagcagaaattggctctctctgaatctgaatgttcactc-tttggttgtttttaattggtagtatctgaatctgaatgaccacatttgattttaat
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GGGTACAAGAACTTCAACAAGGCCGCGAGGGACCTCATCGGACGCCTCCAGAAGATCGACGGAGACAACTACCCTGAGgtaccacactgcatgtcctgttcgatcgtccagtgaacttgttcgtccaagcaactgcaacaagtgcagccttctgctacatgctcgccctgtgcag----
upper sequence: LOC_Os02g04030.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA16G24670.1 (Glycine max), 5'ss of exon 4
GGGTACAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAGgtagctagcagaaattggctctctctgaatctgaatgttcactctttggttgtttttaattggtagtatctgaatctgaatg--accacatt--tgattttaat----
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GGGCTTAAGAACTTCAACAAGCATGCCAGGGAGCTCATCACCCGCCTTCAGAAGATTGACGGTGACAACTACCCTGAAgtatgttttttcttgtattttgcttaaggtttacataaaagtttagttgcaaataaatattgtggattgctgagttgtaatatcataaaattggtggcttcactgcag
upper sequence: LOC_Os02g04030.3 (Oryza sativa), 5'ss of exon 3
lower sequence: AT2G18180.1 (Arabidopsis thaliana), 5'ss of exon 5
GGGTACAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAGgtagctagcagaaattggctctctctgaatctgaatgttcactctttggttgtttttaattggtagtatctgaatctgaatgaccacatttgattttaat
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GGGCTGAAAAACTTCAACAAGGCAGCAAGGGATTTGATTACGCGTCTTCAAAAGGTCGATGGTGACAACTATCCAGAGgtgcactttatattattatcatcattggttt---atcttttatgaatgattcttgctctctca-acttttttttttcatttatctgtcattggctcag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|66932181|gb|CX119029.1|CX119029EST: GGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAG ACTCTGTGCCGGATGTTCATCATCAACGCCGGTCAAGGATTCAGGCTTCTC
genomic: GGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAGgtagctagca ... attgatgcagACTCTGTGCCGGATGTTCATCATCAACGCCGGTCAAGGATTCAGGCTTCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGTACAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAGgtagctagcagaaattggctctctctgaatctgaatgttcactctttggttgtttttaattggtagtatctgaatctgaatgaccacatttgattttaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctct