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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACACTGACAGGCTTCATGTTTCTATTGACATCGGCATTCCTTGGCTTTgtaagtatcttatggctgtaaattttcgatgctttctttattgtggcctatacagaggagttttattgctcgttgatgcagcagaaatatttcagccaactgataccttattactgttccaattttatctgcag

Basic information

species Oryza sativa
transcript LOC_Os02g02750.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g02750.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G466281_T02 (Zea mays), 5'ss of exon 3
ATTACACTGACAGGCTTCATGTTTCTATTGACATCGGCATTCCTTGGCTTTgtaagta-----tcttatggctgtaaatt--ttcgatgctttctttat---tgtggcctatacagaggagttttattgctcgttgat---------gcagcagaaatatttcagccaactgataccttattactgttccaattttatctgcag
|||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||     |   ||   |   || |  | |  |  | |  ||||   | |    |||    | |  |||  || || | ||||          ||  |  |||| |||||  |  |    | |||||| || | | ||| ||  |||||
ATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaagttttcaatacatacgaaatggtcctgtattgttcttatatatataatatatgtgcaagtttttcctttcttgatgatcatagtactacactactaataattcagaaagtttgagcattattattgcttccattctacgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11172065|gb|AU164099.1|AU164099
EST:     TTACACTGACAGGCTTCATGTTTCTATTGACATCGGCATTCCTTGGCNNN                         NNNNATTCCCCTCATCTCGATACAGCACCACCTAGATGGGTGCACCTTGCA
genomic: TTACACTGACAGGCTTCATGTTTCTATTGACATCGGCATTCCTTGGCTTTgtaagtatct ... ttatctgcagTTTTATTCCCCTCATCTCGATACAGCACCACCTAGATGGGTGCACCTTGCA
EST: gi|29646388|gb|CB651395.1|CB651395
EST:     TTACACTGACAGGCTTCATGTTTCTATTGACATCGGCATTCCTTGGCNNN                         NNNNATTCCCCTCATCTCGATACAGCACCACCTAGATGGGTGCACCTTGCA
genomic: TTACACTGACAGGCTTCATGTTTCTATTGACATCGGCATTCCTTGGCTTTgtaagtatct ... ttatctgcagTTTTATTCCCCTCATCTCGATACAGCACCACCTAGATGGGTGCACCTTGCA