1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGGAGCTGGCCGCGTCTCTGTCGCTGGCGGCGGCGCGGAGGATCGTGGAGGCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctctctctctctctctctttacttttactactgctgctagttgatagatactcatatatgtatatatgtatatatgtgcatgcag
species | Oryza sativa |
transcript | LOC_Os02g01150.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGCTCCCGCACCT GTTCGTGGGGAACTTGCTCAAGGTGTCAGACTGTGGGAGTCATCGGAGCTGEST: gi|29682997|gb|CB679272.1|CB679272
genomic: GGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGG-GTCAGACTGTGGGAGTCATCGGAGCTG
EST: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGGEST: gi|88388887|gb|CI592775.1|CI592775
genomic: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
EST: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT GTTAGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGEST: gi|10794734|gb|AU108700.1|AU108700
genomic: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGG
EST: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGGEST: gi|11442863|gb|BF430762.1|BF430762
genomic: GCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
EST: CAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCT GTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
genomic: CAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctct ... gtgcatgcagGTTCGTGGGGAACTTGCTCAAGGGTCAGACTGTGGGAGTCATCGGAGCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGAGCTGGCCGCGTCTCTGTCGCTGGCGGCGGCGCGGAGGATCGTGGAGGCAGATCAGTTCATGAGGGCTGGCCTCTACGACGGATGGCTCCCGCACCTgtctctctctctctctctctctctttacttttactactgctgctagttgatagatactcatatatgtatatatgtatatatgtgcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA