1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCGCGCCGGCGGAACAGCCTTCAGCAACATGGCCGTCGGGTACAACAACGTCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctgccgccctctgcttcttgatttctagactatcttactggatggtaatttacttacatacgtacacatgtacag
species | Oryza sativa |
transcript | LOC_Os02g01150.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|38468625|gb|CF952756.1|CF952756
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|88360976|gb|CI625282.1|CI625282
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTEST: gi|88324430|gb|CI566243.1|CI566243
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCT
EST: CGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCEST: gi|88443673|gb|CI591898.1|CI591898
genomic: CGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAA-CACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGC
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCEST: gi|29674134|gb|CB670409.1|CB670409
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGC
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|29680605|gb|CB676880.1|CB676880
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|33683103|gb|CF311342.1|CF311342
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|29616322|gb|CB621334.1|CB621334
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|88426387|gb|CI576629.1|CI576629
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGEST: gi|10794734|gb|AU108700.1|AU108700
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCC-TCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGA-CTGGCCGCGTCTCTGTCGCTGGCGEST: gi|88368586|gb|CI645044.1|CI645044
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGAEST: gi|29682953|gb|CB679228.1|CB679228
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGA
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|29682997|gb|CB679272.1|CB679272
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|88314098|gb|CI600100.1|CI600100
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGGATCGCCGTCGGCAACACGCCT GGCGTTCTGACEST: gi|29655664|gb|CB651939.1|CB651939
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGAC
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|86900810|gb|CI304015.1|CI304015
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGAEST: gi|117233241|gb|CT848054.1|CT848054
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGA
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|88385976|gb|CI568644.1|CI568644
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGA-GGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|88404175|gb|CI575663.1|CI575663
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|29621567|gb|CB626578.1|CB626578
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|88425575|gb|CI569299.1|CI569299
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: CGACGTGGAGGCCGCCAAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGAGEST: gi|88431489|gb|CI579606.1|CI579606
genomic: CGACGTGGAGGCCGCCAA-TAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|29667837|gb|CB664112.1|CB664112
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCACTAAGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|58606736|gb|CK034769.1|CK034769
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|29660668|gb|CB656943.1|CB656943
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|88449373|gb|CI582245.1|CI582245
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGEST: gi|29678225|gb|CB674500.1|CB674500
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|88388887|gb|CI592775.1|CI592775
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|29613448|gb|CB618461.1|CB618461
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|29676108|gb|CB672383.1|CB672383
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCGEST: gi|33670534|gb|CF298773.1|CF298773
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCGCCGGCGGAACAGCCTTCAGCAACATGGCCGTCGGGTACAACAACGTCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctgccgccctctgcttcttgatttctagactatcttactggatggtaatttacttacatacgtacacatgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG