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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAGAGTCTGCTTATGGCCAATTTGAATCTCATGACTTCTCAAAAGTCCTGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttcagaggatagtaggaatcatggacagctaaatatttcatctaattttgtctcagtaagctgcagtactaaagattgatttttcag

Basic information

species Oryza sativa
transcript LOC_Os01g74580.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g74580.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G341404_T01 (Zea mays), 5'ss of exon 4
ATTAGAGTCTGCTTATGGCCAATTTGAATCTCATGACTTCTCAAAAGTCCTGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttcagaggatagtaggaatcatggacagctaaatatttcatctaattttgtctcagtaagctgcagtactaaagattgatttttcag
|||| | ||||||||||||||||| || |||   ||||||||||||||| |||| |||||||||||||||||||| ||||||||||||   ||||||||||| |  |                   | ||| ||  |||  || |||||||   | ||||  |   |||  || ||||||||||| ||| |||
ATTACAATCTGCTTATGGCCAATTCGATTCTGGAGACTTCTCAAAAGTCGTGGAATACATCAACAAAATTGTGCTGGTTTTTTCTCCAGGTTGCTTAAAGgtgtgat-------------------acggataggcaaa--ttccatctaaccctttctccttggtctgtggtgctaaagattgaatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33678961|gb|CF307200.1|CF307200
EST:     TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAG                         GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
genomic: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
EST: gi|218484052|gb|FG943456.1|FG943456
EST:     TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAG                         GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
genomic: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
EST: gi|58597523|gb|CK008051.1|CK008051
EST:     TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAAGTGCTTAAAG                         GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
genomic: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
EST: gi|29616879|gb|CB621891.1|CB621891
EST:     TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAG                         GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
genomic: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
EST: gi|117246981|gb|CT843770.1|CT843770
EST:     TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAG                         GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
genomic: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
EST: gi|58677217|gb|CK065904.1|CK065904
EST:     TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAG                         GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
genomic: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
EST: gi|33676606|gb|CF304845.1|CF304845
EST:     TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAG                         GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
genomic: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
EST: gi|29679525|gb|CB675800.1|CB675800
EST:     TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAG                         GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
genomic: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
EST: gi|33677524|gb|CF305763.1|CF305763
EST:     TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAG                         GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
genomic: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT