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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCAGTTTCTGAGCAAGTTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAGgtgcgcttttcatgttaatcatttttaagccattttcaatttcttaacttattattgcaataacagataacctcattgaaaggggaaaatagttcatcaa...

Basic information

species Oryza sativa
transcript LOC_Os01g73910.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58590372|gb|CF988680.1|CF988680
EST:     TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAG                         CTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACTATTGAACACA
genomic: TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAGgtgcgctttt ... ttttcctcagCTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACTATTGAACACA
EST: gi|29624825|gb|CB629836.1|CB629836
EST:     TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAG                         CTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACTATTGAACACA
genomic: TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAGgtgcgctttt ... ttttcctcagCTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACTATTGAACACA
EST: gi|2427812|gb|C72275.1|C72275
EST:     TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAG                         NTTTNAGATCTTCATAAGATCTT
genomic: TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAGgtgcgctttt ... ttttcctcagCTTTCAGATCTTCATCAGATCTT
EST: gi|88411775|gb|CI571267.1|CI571267
EST:     TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAG                         CTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACTATTGAACA
genomic: TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAGgtgcgctttt ... ttttcctcagCTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACTATTGAACA
EST: gi|13806000|gb|AU181304.1|AU181304
EST:     TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAG                         CTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACTATTGAACACA
genomic: TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAGgtgcgctttt ... ttttcctcagCTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACTATTGAACACA
EST: gi|88762070|gb|CI771626.1|CI771626
EST:     TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAG                         CTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACTATTGAACACA
genomic: TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAGgtgcgctttt ... ttttcctcagCTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACTATTGAACACA
EST: gi|58591227|gb|CF989535.1|CF989535
EST:     TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAG                         CTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACTATTGAACACA
genomic: TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAGgtgcgctttt ... ttttcctcagCTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACTATTGAACACA
EST: gi|88312036|gb|CI580201.1|CI580201
EST:     TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAG                         CTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACT
genomic: TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAGgtgcgctttt ... ttttcctcagCTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACT
EST: gi|29683738|gb|CB680013.1|CB680013
EST:     TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAT                         CTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACTATTGAACACA
genomic: TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAGgtgcgctttt ... ttttcctcagCTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACTATTGAACACA
EST: gi|88454163|gb|CI694086.1|CI694086
EST:     TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAG                         CTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACTATTGAACACA
genomic: TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAGgtgcgctttt ... ttttcctcagCTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACTATTGAACACA
EST: gi|13806135|gb|AU181375.1|AU181375
EST:     TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAG                         CTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACTATTGAACACA
genomic: TTATGGTACTTCAGAACATTGGATCGTCTGTGCTAGTCTCTGAAAACCAGgtgcgctttt ... ttttcctcagCTTTCAGATCTTCATCAGATCTTGACCGAGGCAGCAAAACTATTGAACACA