1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGATTATGGGGATGAAATTTGTGGAGCAGTTGTTAGTGTGCGTGGCAAGCAGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttctaagatatgtgctgctaatttatttgttacctgcagataataaccacatagttttcaacatcattaaattcaaacttttacatgtcattg...
species | Oryza sativa |
transcript | LOC_Os01g73880.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|86544785|gb|CI184991.1|CI184991
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|88990171|gb|CI107597.1|CI107597
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|88288752|gb|CI517883.1|CI517883
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGGTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|88529129|gb|CI456611.1|CI456611
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|86854076|gb|CI252067.1|CI252067
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|88560717|gb|CI491406.1|CI491406
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|88539299|gb|CI466400.1|CI466400
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGTATTTCTGGATTACAAGGACTCGATTEST: gi|88424017|gb|CI689716.1|CI689716
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGTATTTCTGGATTACAAGGACTCGATTEST: gi|14571254|gb|BI118622.1|BI118622
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|58680307|gb|CK068994.1|CK068994
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|58692941|gb|CK081628.1|CK081628
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCCATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|8527831|gb|AU092646.1|AU092646
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|88540755|gb|CI468824.1|CI468824
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGTATTTCTGGATTACAAGGACTCGATTEST: gi|14571263|gb|BI118631.1|BI118631
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|88213475|gb|CI213324.1|CI213324
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|86543932|gb|CI184138.1|CI184138
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|88524848|gb|CI453801.1|CI453801
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATEST: gi|88578465|gb|CI687398.1|CI687398
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATT-GGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGAT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGTATTTCTGGATTACAAGGACTCGATTEST: gi|58686020|gb|CK074707.1|CK074707
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|88548459|gb|CI476833.1|CI476833
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|87034065|gb|CI187427.1|CI187427
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|10794861|gb|AU108827.1|AU108827
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|88323665|gb|CI558686.1|CI558686
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|86529829|gb|CI170035.1|CI170035
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|8858103|gb|AU095421.1|AU095421
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATTEST: gi|86527733|gb|CI167939.1|CI167939
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
EST: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAG ATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
genomic: AGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttc ... tcttcatcagATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACAAGGACTCGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATTATGGGGATGAAATTTGTGGAGCAGTTGTTAGTGTGCGTGGCAAGCAGGAAAGAATAGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGgtactatttctaagatatgtgctgctaatttatttgttacctgcagataataaccacatagttttcaacatcattaaattcaaacttttacatgtcattg
- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT