1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATCACGATGGCAATTGCAAGAGAGGTTGCTTCTGTCACCAGACTAGGTGTAGAGgtgtgccagtgcctttcattcttttattgcttatttacccgattaactgtttgaagattgaaattaaatcaagtgaaacataattaggcatgtacatagt...
species | Oryza sativa |
transcript | LOC_Os01g73450.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGATGGCAATTGCAAGAGAGGTTGCTTCTGTCACCAGACTAGGTGTAGAG GTTGCTATTGTTGTTGGTGGCGGCAATATCTTCCGCGGGGCCTCTTGGGCTEST: gi|27547309|gb|CA765514.2|CA765514
genomic: CGATGGCAATTGCAAGAGAGGTTGCTTCTGTCACCAGACTAGGTGTAGAGgtgtgccagt ... acccttgcagGTTGCTATTGTTGTTGGTGGCGGCAATATCTTCCGCGGGGCCTCTTGGGCT
EST: GATGGCAATTGCAAGAGAGGTTGCTTCTGTCACTAGACTAGGTGTAGAG GTTGCTATTGTTGTTGGTGGCGGCAATATCTTCCGCGGGGCCTCTTGGGCTEST: gi|29641572|gb|CB646579.1|CB646579
genomic: GATGGCAATTGCAAGAGAGGTTGCTTCTGTCACCAGACTAGGTGTAGAGgtgtgccagt ... acccttgcagGTTGCTATTGTTGTTGGTGGCGGCAATATCTTCCGCGGGGCCTCTTGGGCT
EST: CGATGGCAATTGCAAGAGAGGTTGCTTCTGTCACCAGACTAGGTGTAGAG GTTGCTATTGTTGTTGGTGGCGGCAATATCTTCCGCGGGGCCTCTTGGGCTEST: gi|218484425|gb|FG955570.1|FG955570
genomic: CGATGGCAATTGCAAGAGAGGTTGCTTCTGTCACCAGACTAGGTGTAGAGgtgtgccagt ... acccttgcagGTTGCTATTGTTGTTGGTGGCGGCAATATCTTCCGCGGGGCCTCTTGGGCT
EST: CGATGGCAATTGCAAGAGAGGTTGCTTCTGTCACCAGACTAGGTGTAGAG GTTGCTATTGTTGTTGGTGGCGGCAATATCTTCCGCGGGGCCTCTTGGGCT
genomic: CGATGGCAATTGCAAGAGAGGTTGCTTCTGTCACCAGACTAGGTGTAGAGgtgtgccagt ... acccttgcagGTTGCTATTGTTGTTGGTGGCGGCAATATCTTCCGCGGGGCCTCTTGGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCACGATGGCAATTGCAAGAGAGGTTGCTTCTGTCACCAGACTAGGTGTAGAGgtgtgccagtgcctttcattcttttattgcttatttacccgattaactgtttgaagattgaaattaaatcaagtgaaacataattaggcatgtacatagt
- - - - - - - GCAAGA
- - - - - - - - AAGAGA
- - - - - - - - - GAGAGG