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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGATACAGAGAAGTACACAAGCATTGCTAATCGTTACCAAATTGAAGCATTGCCAACTTTTATTATCTTCAAGAATGGGAAACCTTGTCATCGCTTTgtaagttttgaggatccaccttttctcaattttaattgatttgttaatgctaacaataatgaggttatctctttttttgtggtctatgctgtttttcatttttgttttggcaatgcag

Basic information

species Oryza sativa
transcript LOC_Os01g73234.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g73234.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM5G843368_T01 (Zea mays), 5'ss of exon 3
AATTGATACAGAGAAGTACACAAGCATTGCTAATCGTTACCAAATTGAAGCATTGCCAACTTTTATTATCTTCAAGAATGGGAAACCTTGTCATCGCTTTgtaagttttgaggatccaccttttctcaattttaattgatttgttaatgctaacaataatgaggttatctctttttttgtggtctatgctgtttttcatttttgttttggcaatgcag
||||||||| ||||||||||| |||||||| | |||||||  |||||||||||||||||||||||| || |||||| |||||||||||||| |||||||||||||| ||||  |  ||  | || |||||||  ||  ||   ||||  ||     ||||     | |    ||||||||   || ||||   |  ||||                  
AATTGATACTGAGAAGTACACTAGCATTGCAAGTCGTTACAGAATTGAAGCATTGCCAACTTTTATCATATTCAAGGATGGGAAACCTTGTTATCGCTTTgtaagtgttgaaaaaacaa-tgttttcaatttccatcaataatttaa--cttgtgctaata----tcttatgttttttgtctcctttgctacctggcattcag---------------