1 5' 3' | 2 5' 3' | 3 5' 3' |
TATAAATGGTATTCGAAGGGCCAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGgtttgtgacaatgtgctttcattaacttgatacattccagcaaatcaattttctaccaattaagactgttaaaagcacatggcagtcatttgctctagccagaaactagcattgaatttctgtcttgttgaaatactttgcag
species | Oryza sativa |
transcript | LOC_Os01g73020.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAG AAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCEST: gi|33686773|gb|CF315012.1|CF315012
genomic: CAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGgtttgtgaca ... tactttgcagAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTC
EST: GGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAG AAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCEST: gi|84117104|gb|CD150871.1|CD150871
genomic: GGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGgtttgtgaca ... tactttgcagAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTC
EST: GGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAG AAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCEST: gi|88509452|gb|CI436958.1|CI436958
genomic: GGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGgtttgtgaca ... tactttgcagAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTC
EST: TATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAG AAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTC
genomic: TATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGgtttgtgaca ... tactttgcagAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATAAATGGTATTCGAAGGGCCAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGgtttgtgacaatgtgctttcattaacttgatacattccagcaaatcaattttctaccaattaagactgttaaaagcacatggcagtcatttgctctagccagaaactagcattgaatttctgtcttgttgaaatactttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC