1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CGGCCTGCGGCGCGAGCTCGGGAGCTGTATACATGGAGAAAGCGAGGTTGAGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATGTATGGTCTCCAGgtatcttgcattgcgtctggcttcctagcagtttggcttaggttgagtaaaatttcacagcgtgggttgttgatttctattgttacaagcaagcaattctgtgcag
species | Oryza sativa |
transcript | LOC_Os01g72870.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATGTATGGTCTCCAG CTTTGCGACGGATTTTCTCGAGATAAGGGCCAAAGAGCCGTCTGTTCATGTEST: gi|27576528|gb|CA999222.1|CA999222
genomic: AGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATGTATGGTCTCCAGgtatcttgca ... ttctgtgcagCTTTGCGACGGATTTTCTCGAGATAAGGGCCAAAGAGCCGTCTGTTCATGT
EST: AGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATGTATGGTCTCCAG CTTTGCGACGGATTTTCTCGAGATAAGGGCCAAAGAGCCGTCTGTTCATGTEST: gi|58677445|gb|CK066132.1|CK066132
genomic: AGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATGTATGGTCTCCAGgtatcttgca ... ttctgtgcagCTTTGCGACGGATTTTCTCGAGATAAGGGCCAAAGAGCCGTCTGTTCATGT
EST: AGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATGTATGGTCTCCAG CTTTGCGACGGATTTTCTCGAGATAAGGGCCAAAGAGCCGTCTGTTCATGTEST: gi|163918268|gb|EG713182.1|EG713182
genomic: AGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATGTATGGTCTCCAGgtatcttgca ... ttctgtgcagCTTTGCGACGGATTTTCTCGAGATAAGGGCCAAAGAGCCGTCTGTTCATGT
EST: AGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATGTATGGTCTCCAG CTTTGCGACGGATTTTCTCGAGATAAGGGCCAAAGAGCCGTCTGTTCATGT
genomic: AGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATGTATGGTCTCCAGgtatcttgca ... ttctgtgcagCTTTGCGACGGATTTTCTCGAGATAAGGGCCAAAGAGCCGTCTGTTCATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCCTGCGGCGCGAGCTCGGGAGCTGTATACATGGAGAAAGCGAGGTTGAGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATGTATGGTCTCCAGgtatcttgcattgcgtctggcttcctagcagtttggcttaggttgagtaaaatttcacagcgtgggttgttgatttctattgttacaagcaagcaattctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG