1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCCAGTGCAGGCAAGCCAGTTCCAGTCGGATGGAAGAGTGCTATACTGCCTTGAGCTGACGATGAACTTCAACCACGATGAGGCTGACATCATGGAACAGgtgagctgagttaattattttctctttgcatcaagatgttgacgtatcaggaaatatatatataggatattagatagcccaggccgtgcaggtgttttttaattaatggttggtgtttgtatatgtatttacag
species | Oryza sativa |
transcript | LOC_Os01g71310.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGAGCTGACGATGAACTTCAACCACGATGAGGCTGACATCATGGAACAG GAAGTTGGTGCGCTGCTATCTCGACTCAGATACATATCGTCCACTCTATTCEST: gi|27548636|gb|CA766652.2|CA766652
genomic: TTGAGCTGACGATGAACTTCAACCACGATGAGGCTGACATCATGGAACAGgtgagctgag ... gtatttacagGAAGTTGGTGCGCTGCTATCTCGACTCAGATACATATCGTCCACTCTATTC
EST: TTGAGCTGACGATGAACTTCAACCACGATGGGGCTGACATCATGGAACAG GAAGTTGGTGCGCTGCTATCTCGACTCAGATACATATCGTCCACTCTATTCEST: gi|13904823|gb|BF889461.1|BF889461
genomic: TTGAGCTGACGATGAACTTCAACCACGATGAGGCTGACATCATGGAACAGgtgagctgag ... gtatttacagGAAGTTGGTGCGCTGCTATCTCGACTCAGATACATATCGTCCACTCTATTC
EST: TTGAGCTGACGATGAACTTCAACCACGATGAGGCTGACATCATGGAACAG GAAGTTGGTGCGCTGCTATCTCGATTCAGATAC
genomic: TTGAGCTGACGATGAACTTCAACCACGATGAGGCTGACATCATGGAACAGgtgagctgag ... gtatttacagGAAGTTGGTGCGCTGCTATCTCGACTCAGATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCAGTGCAGGCAAGCCAGTTCCAGTCGGATGGAAGAGTGCTATACTGCCTTGAGCTGACGATGAACTTCAACCACGATGAGGCTGACATCATGGAACAGgtgagctgagttaattattttctctttgcatcaagatgttgacgtatcaggaaatatatatataggatattagatagcccaggccgtgcaggtgttttttaattaatggttggtgtttgtatatgtatttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA