1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGAAAATGCCGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAgtatagctcaattttctctggatgtaaatcctcttatcaatttatctgctatattgtacctgaagatttgtggcttctgtctgatctgtcctcaactcaa...
species | Oryza sativa |
transcript | LOC_Os01g70520.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAA GATGATTTGAAGCTGATGGTTGACACTAACCTAGAGGCTTATAGATTATCCEST: gi|29620623|gb|CB625634.1|CB625634
genomic: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAgtatagctca ... gatggttcagGATGATTTGAAGCTGATGGTTGACACCAACCTAGAGGCTTATAGATTATCC
EST: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAA GATGATTTGAAGCTGATGGTTGACACTAACCTAGAGGCTTATACATTATCCEST: gi|58678434|gb|CK067121.1|CK067121
genomic: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAgtatagctca ... gatggttcagGATGATTTGAAGCTGATGGTTGACACCAACCTAGAGGCTTATAGATTATCC
EST: GCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAA GATGATTTGAAGCTGATGGTTGACACCAACCTAGAGGCTTATAGATTATCCEST: gi|58587977|gb|CF986285.1|CF986285
genomic: GCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAgtatagctca ... gatggttcagGATGATTTGAAGCTGATGGTTGACACCAACCTAGAGGCTTATAGATTATCC
EST: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAA GATGATTTGAAGCTGATGGTTGACACTAACCTAGAGGCTTATAGATTATCCEST: gi|88313076|gb|CI592360.1|CI592360
genomic: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAgtatagctca ... gatggttcagGATGATTTGAAGCTGATGGTTGACACCAACCTAGAGGCTTATAGATTATCC
EST: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAA GATGATTTGAAGCTGATGGTTGACACCAACCTAGAGGCTTATAGATTATCCEST: gi|29619009|gb|CB624021.1|CB624021
genomic: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAgtatagctca ... gatggttcagGATGATTTGAAGCTGATGGTTGACACCAACCTAGAGGCTTATAGATTATCC
EST: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAA GATGATTTGAAGCTGATGGTTGACACTAACCTAGAGGCTTATAGATTATCCEST: gi|88454325|gb|CI569897.1|CI569897
genomic: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAgtatagctca ... gatggttcagGATGATTTGAAGCTGATGGTTGACACCAACCTAGAGGCTTATAGATTATCC
EST: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAA GATGATTTGAAGCTGATGGTTGACACCAACCTAGAGGCTTATAGATTATCCEST: gi|58593808|gb|CF992116.1|CF992116
genomic: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAgtatagctca ... gatggttcagGATGATTTGAAGCTGATGGTTGACACCAACCTAGAGGCTTATAGATTATCC
EST: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAA GATGATTTGAAGCTGATGGTTGACACTAACCTAGAGGCTTATAGATTATCCEST: gi|117242417|gb|CT842994.1|CT842994
genomic: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAgtatagctca ... gatggttcagGATGATTTGAAGCTGATGGTTGACACCAACCTAGAGGCTTATAGATTATCC
EST: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAA GATGATTTGAAGCTGATGGTTGACACTAACCTAGAGGCTTATAGATTATCCEST: gi|29614528|gb|CB619541.1|CB619541
genomic: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAgtatagctca ... gatggttcagGATGATTTGAAGCTGATGGTTGACACCAACCTAGAGGCTTATAGATTATCC
EST: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAA GATGATTTGAAGCTGATGGTTGACACTAACCTAGAGGCTTATAGATTATCCEST: gi|58609911|gb|CK037944.1|CK037944
genomic: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAgtatagctca ... gatggttcagGATGATTTGAAGCTGATGGTTGACACCAACCTAGAGGCTTATAGATTATCC
EST: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAA GATGATTTGAAGCTGATGGTTGACACTAACCTAGAGGCTTATAGATTATCCEST: gi|88454346|gb|CI569918.1|CI569918
genomic: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAgtatagctca ... gatggttcagGATGATTTGAAGCTGATGGTTGACACCAACCTAGAGGCTTATAGATTATCC
EST: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAA GATGATTTGAAGCTGATGGTTGACACCAACCTAGAGGCTTATAGATTATCCEST: gi|88420750|gb|CI564586.1|CI564586
genomic: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAgtatagctca ... gatggttcagGATGATTTGAAGCTGATGGTTGACACCAACCTAGAGGCTTATAGATTATCC
EST: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAA GATGATTTGAAGCTGATGGTTGACACCAACCCTAGAGGCTTATAGATTATCEST: gi|58689675|gb|CK078362.1|CK078362
genomic: CGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAgtatagctca ... gatggttcagGATGATTTGAAGCTGATGGTTGACACCAACC-TAGAGGCTTATAGATTATC
EST: GAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAA GATGATTTGAAGCTGATGGTTGACACTAACCTAGAGGCTTATAGATTATCC
genomic: GAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAgtatagctca ... gatggttcagGATGATTTGAAGCTGATGGTTGACACCAACCTAGAGGCTTATAGATTATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAAATGCCGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAgtatagctcaattttctctggatgtaaatcctcttatcaatttatctgctatattgtacctgaagatttgtggcttctgtctgatctgtcctcaactcaa
- - - - - - - AGAAGC
- - - - - - - - - - CAGCTG
- - - - - - - - - - - AGCTGA
- - - - - - - - - - - GCTGAT