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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGTTTCGGGCGACCGATAGCCAGCAAGCCTGATGCGTGGTTCGATGTGGTTGAGCGCTACTCGACTGACAGCAACAAGACACTGCAgtatgaatacatttcttctcctgaatcccgatttcatatctgattagcatgcatgatatcctgatccaacaattaacgctgcacctctgaataactctgaatttctgatcgatgcaaatgcatatgtctacatatatatgcag

Basic information

species Oryza sativa
transcript LOC_Os01g70360.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g70360.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 3
GACTGTTTCGGGCGACCGATAGCCAGCAAGCCTGATGCGTGGTTCGATGTGGTTGAGCGCTACTCGACTGACAGCAACAAGACACTGCAgtatgaatacatttcttctcctgaatcccgatttcatatctgattagcatgcatgatatcctgatccaacaattaacgctgcacctctgaataactctgaatttctgatcgatgcaaatgcatatgtctacatatatatgcag
|||||||| ||| |||| || || ||    |||||||| ||||| ||||| || || |||||||||| ||| | ||||||||||||| ||||| |     | | |  |  | |  ||     | || | | ||||   |     || |  |  |  ||      | |  | |    | | |   |||||| |                                        
GACTGTTTTGGGAGACCAATTGCAAGTGCTCCTGATGCTTGGTTTGATGTTGTCGAACGCTACTCGAATGATAACAACAAGACACTGAAgtataaccctctgtttatttttcagacctataattatgttttattatttt-----attttttctttgaaagggagatgggggaggatttatt--ttctgaaatatca------------------------------------

upper sequence: LOC_Os01g70360.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 3
GACTGTTTCGGGCGACCGATAGCCAGCAAGCCTGATGCGTGGTTCGATGTGGTTGAGCGCTACTCGACTGACAGCAACAAGACACTGCAgta----tgaatacatttcttctcctg-----aatcccgatttcata---tctgattagcatgcatgata-tcctga--tccaacaattaacgctgcacctctgaataactctg---aatttctgatcgatgcaaatgcatatgtctacatatatatgcag-----------------------------------
|| ||||| |  ||||| ||| | ||    |||||||| ||||| |||||||||||||||||||| | ||||| ||||||||| ||  |||     ||  ||| | | || | ||      | ||     ||| |    |||| |  |     |||| | | ||||  || ||   || |  | |        |||    |     || ||    | |  | | ||    ||    |  ||   | |  |                                   
GATTGTTTTGAACGACCTATATCGAGTGCACCTGATGCTTGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAgtgagtctgtctacttgtgtttttctatcagtagtcgtagcttctttgattctgttgggagaatatgaaaatgctgaattcgaatggttgatacagtcttgtaaaattgtcccattcaagtttaattaggggaagatttgaattctaaattaagaaggttgctgagtaaacctttgttggtgttgactctgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33678345|gb|CF306584.1|CF306584
EST:     TGGTTCGATGTGGTTGAGCGCTACTCGACTGACAGCAACAAGACACTGCA                         CTGCACCACGAAAACATCCAAGTGCCTGAACCTGGCATCCTTCAACTACCT
genomic: TGGTTCGATGTGGTTGAGCGCTACTCGACTGACAGCAACAAGACACTGCAgtatgaatac ... atatatgcagCTGCACCACGAAAACATCCAAGTGCCTGAACCTGGCATCCTTCAACTACCT