1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTGACATATGGGAAGAACGTAACATATTTGGATCCCATGGGCAAAGTCTCAAGGAAGACTATTCTAGAAGGTTCAAGGAGTTCAAATCCAAGTCGgtaagtagtctttactttaaatacttttaatactcatataatcttttattattttcattcatgtatgcatttggtgactctttacaactctctatgtttgtttcacataattacag
species | Oryza sativa |
transcript | LOC_Os01g70060.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTCTCAAGGAAGACTATTCTAGAAGGTTCAAGGAGTTCAAATCCAAGTCG AGAAATTCTAGTGGGGAGCTGCTGGAAAAGGTTATCTCTTGCTACAAGCATEST: gi|29638160|gb|CB643169.1|CB643169
genomic: GTCTCAAGGAAGACTATTCTAGAAGGTTCAAGGAGTTCAAATCCAAGTCGgtaagtagtc ... ataattacagAGAAATTCTAGTGGGGAGCTGCTGGAAAAGGTTATCTCTTGCTACAAGCAT
EST: GTCTCAAGGAAGACTATTCTAGAAGGTTCAAGGAGTTCAAATCCAAGTCG AGAAATTCTAGTGGGGAGCTGCTGGAAAAGGTTATCTCTTGCTACAAGCAT
genomic: GTCTCAAGGAAGACTATTCTAGAAGGTTCAAGGAGTTCAAATCCAAGTCGgtaagtagtc ... ataattacagAGAAATTCTAGTGGGGAGCTGCTGGAAAAGGTTATCTCTTGCTACAAGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGACATATGGGAAGAACGTAACATATTTGGATCCCATGGGCAAAGTCTCAAGGAAGACTATTCTAGAAGGTTCAAGGAGTTCAAATCCAAGTCGgtaagtagtctttactttaaatacttttaatactcatataatcttttattattttcattcatgtatgcatttggtgactctttacaactctctatgtttgtttcacataattacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG