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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTCGAACAATTGGTGTTATAACAAAGgtttgaccctggtcttgagttttttgtctggattaaataagcattgtgttcataccagtgacccagtttgatcttggcttcacttctattatcttccag

Basic information

species Oryza sativa
transcript LOC_Os01g69130.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g69130.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G180335_T01 (Zea mays), 5'ss of exon 3
GTTCTCGAACAATTGGTGTTATAACAAAGgtttgac---cctggtcttgagttttttgtctggattaaataagcattgtgttcatacca-gtgacccagtttgatcttggcttcacttctattatcttccag
|||||||||||||||||||||| ||||||||||      ||| | ||| | || | || ||  |||   |   |||  | |   | |   |  || || |    ||||| ||    || | || ||||||||
GTTCTCGAACAATTGGTGTTATCACAAAGgtttttttttcctcgccttaatttctatg-ctacattt--tggccatcctatctctcctgtgccactcaatgcagtcttgtctgatgttgtgtt-tcttccag

upper sequence: LOC_Os01g69130.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G129155_T02 (Zea mays), 5'ss of exon 3
GTTCTCGAACAATTGGTGTTATAACAAAGgtttgaccctggt---cttgagttttttgtctggattaaat---aagcattgtgttcatacca-gtgacccagtttgatcttggcttcacttctattatcttccag
|||||||||||||||||||||| ||||||||||   | |  |   ||| |  ||  | ||    ||| ||      |||  | |   | |   |  ||  | |   ||||   ||    |||| || ||||||||
GTTCTCGAACAATTGGTGTTATCACAAAGgttttttctttctttccttcaccttaatttccaagttacattttggccatcctatctctcctgtgccactgattgcaatctattctgatgttctgtt-tcttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86826290|gb|CI311113.1|CI311113
EST:     GTTCTCGAACAATTGGTGTTATAACAAAG                         CTGGACATAATGGACAGGGGCACAGATGCTCGTAACTTTCTGTTGGGAAAT
genomic: GTTCTCGAACAATTGGTGTTATAACAAAGgtttgaccct ... tatcttccagCTGGACATAATGGACAGGGGCACAGATGCTCGTAACTTTCTGTTGGGAAAT
EST: gi|58654479|gb|CK043159.1|CK043159
EST:     GTTCTCGAACAATTGGTGTTATAACAAAG                         CTGGACATAATGGACAGGTGCACAGATGCTCGTAACTTTCTGTTGGGAAAT
genomic: GTTCTCGAACAATTGGTGTTATAACAAAGgtttgaccct ... tatcttccagCTGGACATAATGGACAGGGGCACAGATGCTCGTAACTTTCTGTTGGGAAAT
EST: gi|29655723|gb|CB651998.1|CB651998
EST:     GTTCTCGAACAATTGGTGTTATAACAAAG                         CTGGACATAATGGACAGGGGCACAGATGCTCGTAACTTTCTGTTGGGAAAT
genomic: GTTCTCGAACAATTGGTGTTATAACAAAGgtttgaccct ... tatcttccagCTGGACATAATGGACAGGGGCACAGATGCTCGTAACTTTCTGTTGGGAAAT