1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTgtgagatttgtatccttttagttctttttatcatggtatttatgcatttcctcgtaaattctggttgttataccatatctttattattatcatactgtatgccttaatagtacattag
species | Oryza sativa |
transcript | LOC_Os01g67126.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTTGTTGTGAGATTT ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCGGGTGAEST: gi|33794896|gb|CF323328.1|CF323328
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGC-----T-T-CG--TTgtgagatttg ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCGGGTGA
EST: TCACCAACCAAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTEST: gi|396941604|gb|HO188261.1|HO188261
genomic: TCACCAACCAAGATAAGAACAAGTACAACACACCGAAGTACCGCTTC-------G--TTgtgagatttg ... ag
EST: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTTGTTGTGAGATTT ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCGGGTGA
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGC-----T-T-CG--TTgtgagatttg ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCGGGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTgtgagatttgtatccttttagttctttttatcatggtatttatgcatttcctcgtaaattctggttgttataccatatctttattattatcatactgtatgccttaatagtacattag
- - - - - - - - - - - - - - - - - - - - - - - AAGAAC