1 5' 3' | 2 5' 3' | 3 5' 3' |
ATAAAGACGACTTCCCTTATGTGGAAGCTCGTTATGTCTATGGCTCTCCACCAAAGCTCATTATGCTTGATGACAAAGGCGACCAGAAGGAGACTATAAGgtaaattggagagctgtcagaataaatttcttgttatctaagaggatgatgcagatttctctctgaacctaattaattactggctgactggcctcttcac...
species | Oryza sativa |
transcript | LOC_Os01g66960.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCAAAGCTCATTATGCTTGATGACAAAGGCGACCAGAAGGAGACTATAAG GATCGACAACTGGAAGAGGGAGCACATTCGGCAGTTTCTCAAAGAGAAGGTEST: gi|88241367|gb|CI241216.1|CI241216
genomic: CCAAAGCTCATTATGCTTGATGACAAAGGCGACCAGAAGGAGACTATAAGgtaaattgga ... gaacttgcagGATCGACAACTGGAAGAGGGAGCACATTCGGCAGTTTCTCAAAGAGAAGGT
EST: CCAAAGCTCATTATGCTTGATGACAAAGGCGACCAGAAGGAGACTATAAG GATCGACAACTGGAAGAGGGAGCACATTCGGCAGTTTCTCAAAGAGAAGGTEST: gi|29667198|gb|CB663473.1|CB663473
genomic: CCAAAGCTCATTATGCTTGATGACAAAGGCGACCAGAAGGAGACTATAAGgtaaattgga ... gaacttgcagGATCGACAACTGGAAGAGGGAGCACATTCGGCAGTTTCTCAAAGAGAAGGT
EST: CCAAAGCTCATTATGCTTGATGACAAAGGCGACCAGAAGGAGACTATAAG GATCGACAACTGGAAGAGGGAGCACATTCGGCAGTTTCTCAAAGAGAAGGTEST: gi|27577793|gb|CB000488.1|CB000488
genomic: CCAAAGCTCATTATGCTTGATGACAAAGGCGACCAGAAGGAGACTATAAGgtaaattgga ... gaacttgcagGATCGACAACTGGAAGAGGGAGCACATTCGGCAGTTTCTCAAAGAGAAGGT
EST: CCAAAGCTCATTATGCTTGATGACAAAGGCGACCAGAAGGAGACTATAAG GATCGACAACTGGAAGAGGGAGCACATTCGGCAGTTTCTCAAAGAGAAGGTEST: gi|88271146|gb|CI387001.1|CI387001
genomic: CCAAAGCTCATTATGCTTGATGACAAAGGCGACCAGAAGGAGACTATAAGgtaaattgga ... gaacttgcagGATCGACAACTGGAAGAGGGAGCACATTCGGCAGTTTCTCAAAGAGAAGGT
EST: CCAAAGCTCATTATGCTTGATGACAAAGGCGACCAGAAGGAGACTATAAG GATCGACAACTGGAAGAGGGAGCACATTCGGCAGTTTCTCAAAGAGAAGGTEST: gi|88208243|gb|CI208092.1|CI208092
genomic: CCAAAGCTCATTATGCTTGATGACAAAGGCGACCAGAAGGAGACTATAAGgtaaattgga ... gaacttgcagGATCGACAACTGGAAGAGGGAGCACATTCGGCAGTTTCTCAAAGAGAAGGT
EST: CCAAAGCTCATTATGCTTGATGACAAAGGCGACCAGAAGGAGACTATAGG GATCGACAACTGGAAGAGGGAGCACATTCGGCAGTTTCTCAAAGAGAAGGTEST: gi|87020481|gb|CI263344.1|CI263344
genomic: CCAAAGCTCATTATGCTTGATGACAAAGGCGACCAGAAGGAGACTATAAGgtaaattgga ... gaacttgcagGATCGACAACTGGAAGAGGGAGCACATTCGGCAGTTTCTCAAAGAGAAGGT
EST: CCAAAGCTCATTATGCTTGATGACAAAGGCGACCAGAAGGAGACTATAAG GATCGACAACTGGAAGAGGGAGCACATTCGGCAGTTTCTCAAAGAGAAGGTEST: gi|86528331|gb|CI168537.1|CI168537
genomic: CCAAAGCTCATTATGCTTGATGACAAAGGCGACCAGAAGGAGACTATAAGgtaaattgga ... gaacttgcagGATCGACAACTGGAAGAGGGAGCACATTCGGCAGTTTCTCAAAGAGAAGGT
EST: CCAAAGCTCATTATGCTTGATGACAAAGGCGACCAGAAGGAGACTATAAG GATCGACAACTGGAAGAGGGAGCACATTCGGCAGTTTCTCAAAGAGAAGGT
genomic: CCAAAGCTCATTATGCTTGATGACAAAGGCGACCAGAAGGAGACTATAAGgtaaattgga ... gaacttgcagGATCGACAACTGGAAGAGGGAGCACATTCGGCAGTTTCTCAAAGAGAAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAAAGACGACTTCCCTTATGTGGAAGCTCGTTATGTCTATGGCTCTCCACCAAAGCTCATTATGCTTGATGACAAAGGCGACCAGAAGGAGACTATAAGgtaaattggagagctgtcagaataaatttcttgttatctaagaggatgatgcagatttctctctgaacctaattaattactggctgactggcctcttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcttc