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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAAGGTCAACAATCGAGAGGTACAAGAAAGCCTCTGCCAGCACTTCAGGATCCGCTCCAGTGATAGACGTCAATTCTCATgtaagttgttttgtattcattaattggttatatactgtatatccatatgtataatatatatagcacgcatcgtttatatatttaatttggcctgaaattttacccgtaaataactaaatatactacatacattgtgagatttgtgtgttatcttgagccctctaaaatccagtactgggtatcttcacacag

Basic information

species Oryza sativa
transcript LOC_Os01g66290.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g66290.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G018589_T01 (Zea mays), 5'ss of exon 3
CACAAGGTCAACAATCGAGAGGTACAAGAAAGCCTCTGCCAGCACTTCAGGATCCGCTCCAGTGATAGACGTCAATTCTCATgtaagt----tgttttgtattcattaattggttatatactgtatatccatatgtataatatatatagcacgcatcgtttatatatttaatttg-gcctgaaattttacccgtaaataactaaatatactacatacattgtgagatttgtgtgttatcttgagccctctaaaatccagtactgggtatcttcacacag
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CGTAAGGTCGACGATCGAGAGGTACAAGAAAGCCTCTGCCAGCACTTCTGGAACAGCTCCAGTGACAGATGTCAACTCTCTTgtaagcactgtgtgatgtagtctacgattttctctatttta-atttatcggaaaacgctatttatggc-cacataacttatcgatgggcttaaagtctgcaa-----------------------------------------------------------------------------------------------