Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCCTCCTGGCCCTGCACGGCCAGGGCCGCAAGCTCTTCTGCGGCCTCGCCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagtacacaccacacaaatgatctagtatagtacttctttcgtttcacaatgtaagtcattctagcatttttcacatttatattgatattaatg...

Basic information

species Oryza sativa
transcript LOC_Os01g65880.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g65880.3 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv18s0001g15330.t01 (Vitis vinifera), 5'ss of exon 4
CTCCCTCCTGGCCCTGCACGGCCAGGGCCGCAAGCTCTTCTGCGGCCTCGCCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaaga-cagtacacaccacacaaatgatctagtatagtacttctttcgtttcacaatgtaagtcattctagcatttttcacatttatattgatattaatg---
||||||| | ||| | || |||||  || | ||||||||||| ||  | ||||||||||| |||||||||  |||||| || || ||||| ||||||||||||||  ||||  || ||       |  | |||||       ||||   |   |||   |   |     | | |||   | |  | ||  | || | | ||   
CTCCCTCTTCGCCTTACATGGCCATAGCAGGAAGCTCTTCTGTGGTTTGGCCGCCACCATTTTCTCCATCATCATGTATGCATCACCTCTGTCCATCATGgtaagctcagtttactcccttt---ttctttagta----gtctcttgaataagacagactggattgga-tgggattaaactccctgattattatgtaattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58673060|gb|CK061746.1|CK061746
EST:     CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATG                         AGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
genomic: CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagt ... cggtgtgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
EST: gi|11172087|gb|AU164110.1|AU164110
EST:     CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATG                         AGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
genomic: CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagt ... cggtgtgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
EST: gi|11026129|gb|AU162730.1|AU162730
EST:     CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATG                         AGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
genomic: CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagt ... cggtgtgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
EST: gi|8856858|gb|AU094176.1|AU094176
EST:     CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATG                         AGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
genomic: CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagt ... cggtgtgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
EST: gi|58674455|gb|CK063141.1|CK063141
EST:     CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATG                         AGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC
genomic: CCGCCACCATCTTCTCCATCTGCATGTACGCCTCGCCTCTCTCCATCATGgtaagacagt ... cggtgtgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTTCATGCCGTTCCTGCTCTCC