Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaactgaaacctcacactcctctccacaccatctgcatttctccccccacaacattacactacgttttctctcagaagtttcgtgtgattctcga...

Basic information

species Oryza sativa
transcript LOC_Os01g65880.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88299745|gb|CI577247.1|CI577247
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|88299494|gb|CI574607.1|CI574607
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|117218417|gb|CT858164.1|CT858164
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|88571732|gb|CI663105.1|CI663105
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|88337815|gb|CI632317.1|CI632317
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCACCTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCANCGAACAACA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACA
EST: gi|58671599|gb|CK060285.1|CK060285
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|88372296|gb|CI619626.1|CI619626
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|55827951|gb|AU064019.2|AU064019
EST:     CCGGCGTGCCTTACAACATGACACTTCTCAACTTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCA-
genomic: CCGGCGTGCCTTACAACATGACACTTCTCAACT-GCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|58686371|gb|CK075058.1|CK075058
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|88338521|gb|CI645775.1|CI645775
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|4715911|gb|AU057027.1|AU057027
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|58596407|gb|CK006935.1|CK006935
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|58663811|gb|CK052497.1|CK052497
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|88453324|gb|CI565766.1|CI565766
EST:     TCCGGCGTGCCTTACAAAATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|88574722|gb|CI666491.1|CI666491
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|12622713|gb|AU172926.1|AU172926
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|58675409|gb|CK064096.1|CK064096
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|58595504|gb|CK006032.1|CK006032
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|58666605|gb|CK055291.1|CK055291
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|4880424|gb|AU064723.1|AU064723
EST:     NCGGCGTGCCTTACAACATGACACTTCTCAACTTGCCTGCTATCTGCTTT                         GTACGGGCTGCCGTTCGTGTCACCCGA-CAACATCCTTGGTGACG
genomic: CCGGCGTGCCTTACAACATGACACTTCTCAACT-GCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACC-GAACAACATCCT-GGTGACG
EST: gi|58596723|gb|CK007251.1|CK007251
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|58687982|gb|CK076669.1|CK076669
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|8856858|gb|AU094176.1|AU094176
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGANCAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|58598047|gb|CK008575.1|CK008575
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|58590655|gb|CF988963.1|CF988963
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCCGAACAACATCCTGGTGACGACGATCA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACC-GAACAACATCCTGGTGACGACGATCA
EST: gi|88406334|gb|CI596461.1|CI596461
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|58669012|gb|CK057698.1|CK057698
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|88340153|gb|CI650600.1|CI650600
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|25797892|gb|CA753853.1|CA753853
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|58601031|gb|CK011559.1|CK011559
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|88431567|gb|CI579684.1|CI579684
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|88354075|gb|CI636273.1|CI636273
EST:     CCGGCGTGCCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCCTGCCGTTCGTGTCACCGAACAACATCCCGGTGACGACGATCA
genomic: CCGGCGTGCC-TTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGC-TGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCA
EST: gi|58597601|gb|CK008129.1|CK008129
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|58590858|gb|CF989166.1|CF989166
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|88375222|gb|CI680981.1|CI680981
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|29684974|gb|CB681249.1|CB681249
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCGACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|29658996|gb|CB655271.1|CB655271
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|88577893|gb|CI674506.1|CI674506
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|88569829|gb|CI661004.1|CI661004
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA