Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCCTTACAACTTCTGCTCTTCGCGATCATGTCTGCTGCATTTCTGACACTATTGTACACTCCATCTGTGTACGACCATCAAATGCAGTCTAGTTCTCGgtgagtagacctatcaaaaggaaacttattacaatattctgtcagcagtagaatatccagtggaaactagaacaccaattcctgctcgcatcacagtggttatgttggagttatatataataagaaattgcgcattaccctttttgaccatacctttcatatgctttacag

Basic information

species Oryza sativa
transcript LOC_Os01g65780.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58677045|gb|CK065732.1|CK065732
EST:     CATCTGTGTACGACCATC-AATGCAGTCTAG-TCTCG                         G-TTGTCAGTGGGTGGATATGGGACAAGACCATTCCTGATCCACGATATGT
genomic: CATCTGTGTACGACCATCAAATGCAGTCTAGTTCTCGgtgagtagac ... tgctttacagGTTTGTCAGTGGGTGGATATGGGACAAGACCATTCCTGATCCACGATATGT
EST: gi|88417885|gb|CI596562.1|CI596562
EST:     CTATTGTACACTCCATCTGTGTACGACCATCAAATGCAGTCTAGTTCTCG                         GTTTGTCAGTGGGTGGATATGGGACAAGACCATTCCTGATCCACGATATGT
genomic: CTATTGTACACTCCATCTGTGTACGACCATCAAATGCAGTCTAGTTCTCGgtgagtagac ... tgctttacagGTTTGTCAGTGGGTGGATATGGGACAAGACCATTCCTGATCCACGATATGT
EST: gi|33796413|gb|CF324073.1|CF324073
EST:     TATTGTACACTCCATCTGTGTACGACCATCAAATGCAGTCTAGTTTCTCG                         GTTTGTCAGTGGGTGGATATGGGACAAGACCATTCCTGATCCACGATATG
genomic: TATTGTACACTCCATCTGTGTACGACCATCAAATGCAGTCTAGTT-CTCGgtgagtagac ... tgctttacagGTTTGTCAGTGGGTGGATATGGGACAAGACCATTCCTGATCCACGATATG
EST: gi|29630115|gb|CB635124.1|CB635124
EST:     CTATTGTACACTCCATCTGTGTACGACCATCAAATGCAGTCTAGTTCTCG                         GTTTGTCAGTGGGTGGATATGGGACAAGACCATTCCTGATCCACGATATGT
genomic: CTATTGTACACTCCATCTGTGTACGACCATCAAATGCAGTCTAGTTCTCGgtgagtagac ... tgctttacagGTTTGTCAGTGGGTGGATATGGGACAAGACCATTCCTGATCCACGATATGT
EST: gi|33794578|gb|CF323176.1|CF323176
EST:     TATTGTACACTCCATCTGTGTACGACCATCAAATGCAGTCTAGNNTCTCG                         GTTTGTCAGTGGGTGGGATATGGGACAAGACCATTCCTGATCCACGATAT
genomic: TATTGTACACTCCATCTGTGTACGACCATCAAATGCAGTCTAGT-TCTCGgtgagtagac ... tgctttacagGTTTGTCAGTGGGTGG-ATATGGGACAAGACCATTCCTGATCCACGATAT
EST: gi|13420432|gb|AU174522.1|AU174522
EST:     CTATTGTACACTCCATCTGTGTACGACCATCAAATGCAGTCTAGTTCTCG                         GTTTGTCAGTGGGTGGATATGGGACAAGACCATTCCTGATCCACGATATGT
genomic: CTATTGTACACTCCATCTGTGTACGACCATCAAATGCAGTCTAGTTCTCGgtgagtagac ... tgctttacagGTTTGTCAGTGGGTGGATATGGGACAAGACCATTCCTGATCCACGATATGT