1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAAgtgcgtagcttcggatcagaaacgcgacctctctgcttcttgattcgagcaatctgttgttctgtttttcctgacaaaatacatgcatggtgccggttttttttacag
species | Oryza sativa |
transcript | LOC_Os01g64660.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAA GTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|38480766|gb|CF964855.1|CF964855
genomic: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAAgtgcgtagct ... ttttttacagGTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAA GTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|4714676|gb|AU055793.1|AU055793
genomic: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAAgtgcgtagct ... ttttttacagGTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCNGCGCTGCGTGGGAA GTATTGCGTGTGCTTTGATCCACTCGACGGCTCCNCCAACATCGACTGTNGEST: gi|58687204|gb|CK075891.1|CK075891
genomic: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAAgtgcgtagct ... ttttttacagGTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAA GTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACEST: gi|88370994|gb|CI595106.1|CI595106
genomic: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAAgtgcgtagct ... ttttttacagGTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGAC
EST: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAA GTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGG
genomic: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAAgtgcgtagct ... ttttttacagGTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAAgtgcgtagcttcggatcagaaacgcgacctctctgcttcttgattcgagcaatctgttgttctgtttttcctgacaaaatacatgcatggtgccggttttttttacag
- - - - - - - GAGGAG
- - - - - - - - GGAGGA