Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATCTTTATTACAGAAGGAAGGAGATATCAAAAGAGTTGTATGAGTTTTGCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattcgacccatgatttgctctgtaagatgcccatcattccttatactctgtgctagtttagtaagatgccttatccaccttgtataatctttaa...

Basic information

species Oryza sativa
transcript LOC_Os01g63890.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g63890.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G070451_T01 (Zea mays), 5'ss of exon 2
TGATCTTTATTACAGAAGGAAGGAGATATCAAAAGAGTTGTATGAGTTTTGCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattcgacccatgatttgctctgtaagatgcccatcattccttatactctgtgctagtttagtaagatgccttatcc-accttgtataatctttaa-
|||| |||| ||||||||||||||||||||| | ||| | || ||||| | ||||||||||||||||| ||||| ||| ||||| ||||||||||||||||| | ||| |        || |    |||| |  | | || ||||  | |  |||   | |   |  ||   |   |   |  |   || |  |     |  
TGATGTTTACTACAGAAGGAAGGAGATATCACAGGAGCTTTAAGAGTTCTACCTGGACCAGGGTTATGTAGACCATAACCTGATCGCAAAGTGGAAAAAGgtaattatccttggttccatatttgttgtacgtggtctat-attcgattttttctccac-aacatcctattctttttgggctgagggtggacgagtcggagg

upper sequence: LOC_Os01g63890.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G053801_T01 (Zea mays), 5'ss of exon 3
TGATCTTTATTACAGAAGGAAGGAGATATCAAAAGAGTTGTATGAGTTTTGCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc--gacccatgatttgctctgtaagatgcccatcattccttatactctgtgctagtttagtaagatgccttatccaccttgtataatctttaa
||||||||| |||||||||||||||||||||   ||| | |||||||| |||||||||||| | |||||||| ||||| ||||| ||||||||||||||||| | ||| |  |   |  |||||| | |  | | |   ||||     | ||  |   |  |   |    |  |   | | ||    | |    |    |  
TGATCTTTACTACAGAAGGAAGGAGATATCACGGGAGCTTTATGAGTTCTGCCTGGACCAGAGCTATGCAGATCGTAACCTGATCGCAAAGTGGAAAAAGgtaattatccttggttccagatttgttgtacatggtctacatctcagttgat-ttgatttttctctctccacaacatcctgtcttattggggggaagggtg-

upper sequence: LOC_Os01g63890.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G095670_T02 (Zea mays), 5'ss of exon 3
TGATCTTTATTACAGAAGGAAGGAGATATCAAAAGAGTTGTATGAGTTTTGCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattcgacccatgatttgctctgtaagatgcccatcattccttatactctgtgctagtttagtaagatgccttatccaccttgtataatctttaa
 |||||||| ||||||||||||||||||||| | ||| | |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |  || |      | || |    ||||    | | ||   ||  |    |   |  |  |||      |   | |      ||| |   ||      
CGATCTTTACTACAGAAGGAAGGAGATATCACAGGAGCTTTATGAGTTCTGCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAGgtaatcatccttggtttcatatttgttgtacatggtctatatctcagttggtttgatttttttttctctccacagcatcctgttcttttgggattgaggg

upper sequence: LOC_Os01g63890.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G020728_T01 (Zea mays), 5'ss of exon 3
TGATCTTTATTACAGAAGGAAGGAGATATCAAAAGAGTTGTATGAGTTTTGCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattcgacccatgatttgctctgtaagatgcccatcattccttatactctgtgctagtttagt--aagatgccttatccaccttgtataatctttaa
 |||||||||||||||||||||||||||||| | ||| | |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |  || |      | || |    ||||    | | || ||  |   |  | |||  |  |||  |  |  |   | | | |   |||  |      |  
CGATCTTTATTACAGAAGGAAGGAGATATCACAGGAGCTTTATGAGTTCTGCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAGgtaatcatccttggtttcatatttgttgtacatggtctat-atctcagttggtttgtttttttttcctccacaacatcctgttctttttgggttgaggatg-

upper sequence: LOC_Os01g63890.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G174792_T01 (Zea mays), 5'ss of exon 9
-----------------------------TGATCTTTATTACAGAAGGAAGGAGATATCAAAAGAGTTGTATGAGTTTTGCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattcgacccatgatttgctctgtaagatgcccatcattccttata-----ctctgtgctagtttagtaagatgccttatccaccttgtataatctttaa
                             ||||||||| ||||||||||||||||||||  | ||| | |||||||| |   |||||| ||||||||||||| |||| |||||  |||||||||||||||| | ||| |   |  | || |    | | |  |       |||   | ||     || ||||  |      |||                              
ATTTCTCATCAAAGGAGCCACTTCATATATGATCTTTACTACAGAAGGAAGGAGATATCGCAGGAGCTTTATGAGTTCT---TGGACCCGGGTTATGCAGACTgtaagctgatcacaaagtggaaaaaggtaattatcct-tcattaatatatggtttgactttttatctattttctgtagccacctttgtgtcaaacccataa------------------------------

upper sequence: LOC_Os01g63890.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G099007_T01 (Zea mays), 5'ss of exon 2
TGATCTTTATTACAGAAGGAAGGAGATATCAAAAGAGTTGTATGAGTTTTGCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc--gacccatgatttgctctgtaagatgcccatcattccttatactctgtgctagtttagtaagatgccttatccaccttgtataatctttaa
||||||||| |||||||||||||||||||||   ||| | |||||||| |||||||||||| | |||||||||||||| ||||| ||||||||||||||||| | ||| |  |   |  |||||| | || | | |   ||||     | ||  |   |  |   |    |  |   | | ||    | |    |   |   
TGATCTTTACTACAGAAGGAAGGAGATATCACGGGAGCTTTATGAGTTCTGCCTGGACCAGAGCTATGCAGACCGTAACCTGATCGCAAAGTGGAAAAAGgtaattatccttggttccagatttgttgtgcatggtctacatctcagttgat-ttgatttttctctctccacaacatcctgtcttattggggggagggtgg-

upper sequence: LOC_Os01g63890.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G129979_T01 (Zea mays), 5'ss of exon 3
---TGATCTTTATTACAGAAGGAAGGAGATATCAAAAGAGTTGTATGAGTTTTGCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattcgacccatgatttgctctgtaagatgcccatcattccttatactctgtgctagtttagtaagatgcctta-tccaccttgtataatctttaa
   || |||||| ||||||||||||||||||||  | ||| | |||||||| |   |||||| ||||||||||||| |||| |||||  |||||||||||||||| | ||| |   |  | || ||   | | |  |       |||   | ||  |     |   | |     ||  || | |  |    ||  |  |   | 
ATATGGTCTTTACTACAGAAGGAAGGAGATATCGCAGGAGCTTTATGAGTTCT---TGGACCCGGGTTATGCAGACTGTAAGCTGATCACAAAGTGGAAAAAGgtaattatcct-tcattaatatgtggtttgactttttatctattttctgtagccacctttgcgtcaaacccataactgaatttaaagagtggacaccacac

upper sequence: LOC_Os01g63890.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv05s0020g01520.t01 (Vitis vinifera), 5'ss of exon 3
TGATCTTTATTACAGAAGGAAGGAGATATCAAAAGAGTTGTATGAGTTTTGCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtatt-cgac--ccatgatttgctctgtaagatgcccatcattccttatactctg---tgctagtttagtaagatgccttatccaccttgtataatctttaa
|||||||||  || | ||||| || ||||| || ||| |||||||||| ||| |||| || || ||||||||||| ||||| |||||||||||||| |||||| || |  | ||     | ||| |     |      |  | ||| |||| |||| ||   | |   ||| ||  |  |||||||  |  |||    ||||    
TGATCTTTACCACCGGAGGAAAGAAATATCTAAGGAGCTGTATGAGTTCTGCATGGATCAAGGCTATGCAGACCGCAATCTAATTGCAAAGTGGAAGAAGgtttgtttcacaacatttttcattagaatcttctacctcatagcatccctt-tactttggttttccgtttttgtttgg-gccttat--atgttgacacatctag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89187948|gb|CI009932.1|CI009932
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|88688900|gb|CI732476.1|CI732476
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|89183690|gb|CI046255.1|CI046255
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|88538216|gb|CI467228.1|CI467228
EST:     ATCTGATTGCAAAGTGGAAAAAG                         CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: ATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|86821074|gb|CI357724.1|CI357724
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|88531540|gb|CI460022.1|CI460022
EST:     TCTGATTGCAAAGTGGAAAAAG                         CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: TCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|88522801|gb|CI450590.1|CI450590
EST:     GATTGCAAAGTGGAAAAAG                         CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|88980059|gb|CI026349.1|CI026349
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|86826773|gb|CI268712.1|CI268712
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|89183697|gb|CI046262.1|CI046262
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|88908885|gb|CI716610.1|CI716610
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|88668336|gb|CI723075.1|CI723075
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|87013784|gb|CI269283.1|CI269283
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|87025420|gb|CI267786.1|CI267786
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|89170119|gb|CI039396.1|CI039396
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|88670638|gb|CI724754.1|CI724754
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|66928127|gb|CX114975.1|CX114975
EST:     GCCTGGACCAGAGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|88529433|gb|CI457748.1|CI457748
EST:     AGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: AGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|86825683|gb|CI361825.1|CI361825
EST:     TATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: TATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|86490854|gb|CI133487.1|CI133487
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|15849698|gb|BI797974.1|BI797974
EST:     GCCTGGACCAGAGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|88902698|gb|CI088236.1|CI088236
EST:     GGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|218481045|gb|FG949218.1|FG949218
EST:     GCCTGGACCAGAGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGAACAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|88672021|gb|CI726137.1|CI726137
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|88676223|gb|CI730336.1|CI730336
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|218485232|gb|FG957354.1|FG957354
EST:     GCCTGGACCAGAGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGAGCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|86825520|gb|CI361710.1|CI361710
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|218484368|gb|FG949629.1|FG949629
EST:     GCCTGGACCAGTGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|88540539|gb|CI468592.1|CI468592
EST:     GTAATCTGATTGCAAAGTGGAAAAAG                         CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|89172063|gb|CI721122.1|CI721122
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|88224609|gb|CI222789.1|CI222789
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|88225582|gb|CI225498.1|CI225498
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|86427879|gb|CI072976.1|CI072976
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|86535557|gb|CI175763.1|CI175763
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|86595501|gb|CI264598.1|CI264598
EST:     ATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: ATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|86876136|gb|CI325614.1|CI325614
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|4716862|gb|AU057978.1|AU057978
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: gi|87019415|gb|CI279925.1|CI279925
EST:     GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG                         CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 64 (upstream exon), 61 (downstream exon)
Score: 9

TGATCTTTATTACAGAAGGAAGGAGATATCAAAAGAGTTGTATGAGTTTTGCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACAACTTTGCAACTACATGCGTCTGCCGGGTCCCCAAGCATCTCAGAGAGG




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATCTTTATTACAGAAGGAAGGAGATATCAAAAGAGTTGTATGAGTTTTGCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattcgacccatgatttgctctgtaagatgcccatcattccttatactctgtgctagtttagtaagatgccttatccaccttgtataatctttaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA