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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGAGATTATGCTCTTGAGATGTGGAGGCTTCTTGATCCAGAAGCCAACTTGATAAGCTCTCATAACCTTGCAGAGCGTGTAGTATGTGTAAAGTCAGgtaaattttcaagaaattggaggttcttttttttctgctatctttcattgctttcttgtctcaacatgttttgttatattgacatcgttactaaacacag...

Basic information

species Oryza sativa
transcript LOC_Os01g63820.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g63820.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G039650_T02 (Zea mays), 5'ss of exon 3
GAGAGAGATTATGCTCTTGAGATGTGGAGGCTTCTTGATCCAGAAGCCAACTTGATAAGCTCTCATAACCTTGCAGAGCGTGTAGTATGTGTAAAGTCAGgtaaatt--ttcaagaaattggaggttcttttttttctgctatctttcattgctttcttgtctcaacatgttttgttatattgacatcgttactaaacacag
|||||||||||||||||||| |||||||| |||||||||||||||| |||||| |||||  | ||  | ||  |||| || |||   |||||||||||||| || |    |      |      || |  |  || ||| ||||| |  |   |   || ||   |||   | |   | ||||   |  || |      |  
GAGAGAGATTATGCTCTTGAAATGTGGAGACTTCTTGATCCAGAAGGCAACTTAATAAGTCCACAACAGCTCTCAGAACGCGTAAATTGTGTAAAGTCAGgcaagtgaacttgtttcaactattgtgcaatgattcctg-tatctgttttgtttcatttatcctgacaaactcttcca-attgttcttttttcccctttctt

upper sequence: LOC_Os01g63820.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AT5G01270.2 (Arabidopsis thaliana), 5'ss of exon 3
GAGAGAGATTATGCTCTTGAGATGTGGAGGCTTCTTGATCCAGAAGCCAACTTGATAAGCTCTCATAACCTTGCAGAGCGTGTAGTATGTGTAAAGTCAGgtaaattttcaagaaattggaggttcttttttttctgctatctttcattgctttcttgtctcaacatgttttgtta-tattgacatcgttactaaacacag-----
|| || ||||||||||| || |||||||| || |||||||| |||||  ||||||||||     |  | |||  ||| ||| | || || |||||  ||||| ||     ||  || |   | ||||||  |  |    |||||   ||   | | |  | || |||| |   ||| | | |   || |||||             
GAAAGGGATTATGCTCTGGAAATGTGGAGACTGCTTGATCCGGAAGCACACTTGATAAGTCTCAAGGAGCTTCGAGATCGTATCGTCTGCGTAAAACCAGgtcaa-----aaccaactctggcttctttgatacccttgatcttggttttggtacatagc-caccatgctccattagtgtagctttcattactctttttgtggtga

upper sequence: LOC_Os01g63820.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv08s0007g02130.t01 (Vitis vinifera), 5'ss of exon 3
GAGAGAGATTATGCTCTTGAGATGTGGAGGCTTCTTGATCCAGAAGCCAACTTGATAAGCTCTCATAACCTTGCAGAGCGTGTAGTATGTGTAAAGTCAGgtaaattttcaagaaattggaggttcttttttttctgct--atctttcattgctttcttgtctcaacatgttttgttatattgacatcgttactaaacacag
|| |||||||||||| | |||||||||||||||||||| ||||| ||  |  | ||| | ||  |  | |||   || ||||| ||||||||||| ||||| ||  |||  |  | || |||  | |||      || |  ||  || |    ||   ||     || |   | ||||  |||| ||    || |   | | 
GAAAGAGATTATGCTTTAGAGATGTGGAGGCTTCTTGACCCAGAGGCACATCTAATAGGTTCCAAGCAACTTTTGGACCGTGTTGTATGTGTAAAATCAGgcaagctttttatgattttgagaatatttcaaccttgtttcatgcttaaagttttagatgctatgacctagct-gttaacttga-attaacacaagttataa