1 5' 3' | 2 5' 3' | 3 5' 3' |
CATCAACTCCGCCGTCGGCGCGCTCCTCGTCAGCTTCACCGTCTACATCATCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaagaacctctctgcacatgccctaactatgccccatcatcatcgctgcatgcatgtttttgttccggtacaccgcctcgtccatccatccac...
species | Oryza sativa |
transcript | LOC_Os01g63770.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|29646076|gb|CB651083.1|CB651083
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|86494568|gb|CI137201.1|CI137201
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|87042096|gb|CI194720.1|CI194720
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|87039973|gb|CI194595.1|CI194595
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|87041578|gb|CI196200.1|CI196200
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|86502680|gb|CI145313.1|CI145313
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|86479174|gb|CI121807.1|CI121807
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|86858545|gb|CI273104.1|CI273104
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|87040985|gb|CI195607.1|CI195607
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|86484225|gb|CI126858.1|CI126858
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: CATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|87038740|gb|CI192779.1|CI192779
genomic: CATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|88198140|gb|CI197990.1|CI197990
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|88198342|gb|CI198192.1|CI198192
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|88197295|gb|CI197145.1|CI197145
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|87039397|gb|CI194019.1|CI194019
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAGGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|88198128|gb|CI197978.1|CI197978
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|88198063|gb|CI197913.1|CI197913
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|87039545|gb|CI194167.1|CI194167
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|87036225|gb|CI190847.1|CI190847
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAGGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|87040152|gb|CI193361.1|CI193361
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCEST: gi|87038911|gb|CI193533.1|CI193533
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCAACTCCGCCGTCGGCGCGCTCCTCGTCAGCTTCACCGTCTACATCATCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaagaacctctctgcacatgccctaactatgccccatcatcatcgctgcatgcatgtttttgttccggtacaccgcctcgtccatccatccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgcctc