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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGGAGGTGAAAGATTACGAAAGGTCCCTCCTTTCAGCAAGCTACTCTCTAAATGGCCAACATGGGCTTTAATTTCTGCAAATGCTATGCATAGTTGGgtaactcctataaacacacttttattggtttggttctgtcacgtcaaaagcattatttattcatttaagataatttcttaagtgctgtgctatatttttcag

Basic information

species Oryza sativa
transcript LOC_Os01g63290.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g63290.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM5G856598_T02 (Zea mays), 5'ss of exon 3
ATCTGGAGGTGAAAGATTACGAAAGGTCCCTCCTTTCAGCAAGCTACTCTCTAAATGGCCAACATGGGCTTTAATTTCTGCAAATGCTATGCATAGTTGGgtaactcctataaacacacttttattggtt--tggttctgtcacgtcaaaagcattatttattcatttaagataatttcttaagtgctgtgctatatttttcag
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AATTGGAAGTGAAAAAACAAAAAAGGTTCCCCCTTTCAGTAAACTGCTTTCCAAATGGCCAACATGGGCTTTGATTTGTGCAAACGCCATGCATAGCTGGgtaactta-acatttaagttttcatcaattctttgtaagattgtgccacagacag-acacattt-tagggaataatattttttgtctcatg--atctttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66920436|gb|CX107284.1|CX107284
EST:     CTAAATGGCCAACATGGGCTTTAATTTCTGCAAATGCTATGCATAGTTGG                         GGTTATTTTGTCATTCTTTCATGGATGCCAGTGTATTTCAAAACA
genomic: CTAAATGGCCAACATGGGCTTTAATTTCTGCAAATGCTATGCATAGTTGGgtaactccta ... tatttttcagGGTTATTTTGTCATTCTTTCATGGATGCCAGTGTATTTCAAAACA