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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAAGGAAACAAAAGTGCTGAAGTGCAGATTAGCAAAGTCATGGGAAATTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAGgtaagccctttctttcaagctcactctgggaaccttttatcctacttatttaaagttgatgtcgatcatatatgatcttaaggtggtatgtgtgaatacc...

Basic information

species Oryza sativa
transcript LOC_Os01g62810.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g62810.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G337819_T02 (Zea mays), 5'ss of exon 6
ATGAAAGGAAACAAAAGTGCTGAAGTGCAGATTAGCAAAGTCATGGGAAATTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAGgtaagccctttct--ttcaagctcactctgggaaccttttatcctacttatttaaagttgatgtcg-------atcatatatgatcttaaggtggtatgtgtgaatacc
|||||||| |||||   ||||||||  ||  | || |||||| ||||||||||||||| ||| ||||| ||||| ||||| ||||||||||||||||||||| ||   | | |  ||  || |   |   |  |    ||| | |  | || || ||     ||||        ||||     |||| | ||| || ||          
ATGAAAGGTAACAAGGCTGCTGAAGGACATGTCAGTAAAGTCTTGGGAAATTGCGTGAGGGCAATTGCTTGTGGAGGTCGTCACAGTGCTGTAGTAACAGgtcagttatatatatttttagtttgtttctgctagtaattaccatgttcatgtagagaccgcgtcgccgcgctgtcattctgcatctcatggtagtttga---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29617734|gb|CB622746.1|CB622746
EST:     TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAG                         ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
genomic: TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAGgtaagccctt ... tcttttgcagATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
EST: gi|29617735|gb|CB622747.1|CB622747
EST:     TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAG                         ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
genomic: TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAGgtaagccctt ... tcttttgcagATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
EST: gi|29664301|gb|CB660576.1|CB660576
EST:     TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAG                         ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
genomic: TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAGgtaagccctt ... tcttttgcagATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
EST: gi|29677605|gb|CB673880.1|CB673880
EST:     CAGTGCTGTAGTAACAG                         ATTCAGGACCACTACTTACATTTGGATGGGGACTGTACGGACAG
genomic: CAGTGCTGTAGTAACAGgtaagccctt ... tcttttgcagATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
EST: gi|4879074|gb|AU063373.1|AU063373
EST:     TTGCGTGAAGGCCATTGCATGTNGGGGTCGCCACAGTGCTGTAGTAACAG                         ATTCAGGAGCACTACTTACATTTGGATGGG
genomic: TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAGgtaagccctt ... tcttttgcagATTCAGGAGCACTACTTACATTTGGATGGG
EST: gi|29670637|gb|CB666912.1|CB666912
EST:     TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAG                         ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
genomic: TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAGgtaagccctt ... tcttttgcagATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
EST: gi|86900111|gb|CI300166.1|CI300166
EST:     TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAG                         ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG
genomic: TTGCGTGAAGGCCATTGCATGTGGGGGTCGCCACAGTGCTGTAGTAACAGgtaagccctt ... tcttttgcagATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG