1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGAATGATAACTTCCCATCTTCACTATTGGATGAATTCAAAAGTAATAAGGCCAGAAGTTTTGAACTTGCTGAGATTGCCAGTCATGTGGTTGAGTTCAGgtatacctagtcgtgtacttctgcaatactgatatgagtttgaatcatactaaaacccatgaaaaaacatccaattacaaataggatgaaatggtctcca...
species | Oryza sativa |
transcript | LOC_Os01g62650.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCCAGAAGTTTTGAACTTGCTGAGATTGCCAGTCATGTGGTTGAGTTCAG CGCTGACCAATACGGAAGCCGTTTCATACAGCAAAAACTTGAAACCGCAACEST: gi|29633936|gb|CB638945.1|CB638945
genomic: GCCAGAAGTTTTGAACTTGCTGAGATTGCCAGTCATGTGGTTGAGTTCAGgtatacctag ... gattatgcagCGCTGACCAATACGGAAGCCGTTTCATACAGCAAAAACTTGAAACCGCAAC
EST: GCCAGAAGTTTTGAACTTGCTGAGATTGCCAGTCATGTGGTTGAGTTCAG CGCTGACCAATAEST: gi|29645188|gb|CB650195.1|CB650195
genomic: GCCAGAAGTTTTGAACTTGCTGAGATTGCCAGTCATGTGGTTGAGTTCAGgtatacctag ... gattatgcagCGCTGACCAATA
EST: GCCAGAAGTTTTGAACTTGCTGAGATTGCCAGTCATGTGGTTGAGTTCAG CGCTGACCAATACGGAAGCCGTTTCATACAGCAAAAACTTGAAACCGCAAC
genomic: GCCAGAAGTTTTGAACTTGCTGAGATTGCCAGTCATGTGGTTGAGTTCAGgtatacctag ... gattatgcagCGCTGACCAATACGGAAGCCGTTTCATACAGCAAAAACTTGAAACCGCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAATGATAACTTCCCATCTTCACTATTGGATGAATTCAAAAGTAATAAGGCCAGAAGTTTTGAACTTGCTGAGATTGCCAGTCATGTGGTTGAGTTCAGgtatacctagtcgtgtacttctgcaatactgatatgagtttgaatcatactaaaacccatgaaaaaacatccaattacaaataggatgaaatggtctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT