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GTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCGGCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatccatgcgctatgtgctgcgtcgatccggtctctctcgggcgtgtgggttgcggtggtagtttttggctagatctagtcgtggtttcgctagat...
species | Oryza sativa |
transcript | LOC_Os01g62080.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTGGTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|58680098|gb|CK068785.1|CK068785
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|117243444|gb|CT848361.1|CT848361
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|88576664|gb|CI670809.1|CI670809
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGNTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|88307805|gb|CI644845.1|CI644845
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|58694718|gb|CK083405.1|CK083405
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|88337067|gb|CI628153.1|CI628153
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|88420986|gb|CI620304.1|CI620304
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|88390894|gb|CI611120.1|CI611120
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|58695186|gb|CK083873.1|CK083873
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|58654607|gb|CK043287.1|CK043287
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GG--CCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGGTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|29665089|gb|CB661364.1|CB661364
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|88412995|gb|CI578846.1|CI578846
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCGCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|58691283|gb|CK079970.1|CK079970
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|88362877|gb|CI614233.1|CI614233
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGGGEST: gi|58593129|gb|CF991437.1|CF991437
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCGGGTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|88431020|gb|CI572010.1|CI572010
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|29679261|gb|CB675536.1|CB675536
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|86891175|gb|CI305952.1|CI305952
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAA
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCGGCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatccatgcgctatgtgctgcgtcgatccggtctctctcgggcgtgtgggttgcggtggtagtttttggctagatctagtcgtggtttcgctagat
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