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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACTTGTTGTCAGGATTTATCTTGTGGTTTACTGCCTTCTCTATGCAAACACCAAATCCCTACAGATACCCTATTGGTAAAAAGCGTATGCAGCCACTGgtgagtcctatcacaagattaccttcatgtttgccatgcttattcttcttactgtaatttatgcaattgattccaagggactcaactctcggctattcat...

Basic information

species Oryza sativa
transcript LOC_Os01g62070.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g62070.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G014454_T01 (Zea mays), 5'ss of exon 3
TGACTTGTTGTCAGGATTTATCTTGTGGTTTACTGCCTTCTCTATGCAAACACCAAATCCCTACAGATACCCTATTGGTAAAAAGCGTATGCAGCCACTGgtgagtcct-------atcacaagat-taccttcatgtttgccatgcttattc--ttcttactgtaatttatgcaattgattccaagggactcaactctcggctattcat
 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||  |        ||||||  | ||  | || ||||     | | ||||  |  ||||  || || |  ||| |     |    |  || |||     ||      
AGACTTGTTGTCAGGATTTATCTTGTGGTTTACTGCCTTTTCAATGCAAACACCAAATCCATACAGATACCCAATTGGGAAAAAGCGGATGCAGCCACTGgtgagtttttatttgtgtcacaacctgtatttccaagtttctttggatcattcggtctttaccatagttca--caacttcacacgtttggttccacta--aact------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29661349|gb|CB657624.1|CB657624
EST:     CACCAAATCCCTACAGATACCCTATTGGTAAAAAGCGTATGCAGCCACTG                         GGAATACTTGTCTTTGCCTCTGTTATGGCGACACTTGGCCTTCAGATCATC
genomic: CACCAAATCCCTACAGATACCCTATTGGTAAAAAGCGTATGCAGCCACTGgtgagtccta ... tcttcttcagGGAATACTTGTCTTTGCCTCTGTTATGGCGACACTTGGCCTTCAGATCATC
EST: gi|33364700|gb|BP433013.1|BP433013
EST:     CACCAAATCCCTACAGATACCCTATTGGTAAAAAGCGTATGCAGCCACTG                         GGAATACTTGTCTTTGCCTCTGTTATGGCGACACTTGGCCTTCAGATCATC
genomic: CACCAAATCCCTACAGATACCCTATTGGTAAAAAGCGTATGCAGCCACTGgtgagtccta ... tcttcttcagGGAATACTTGTCTTTGCCTCTGTTATGGCGACACTTGGCCTTCAGATCATC
EST: gi|313084001|gb|HO213784.1|HO213784
EST:     CACCAAATCCCTACAGATACCCTATTGGTAAAAAGCGTATGCAGCCACTG                         GGAATACTTGTCTTTGCCTCTGTTATGGCGACACTTGGCCTTCAGATCATC
genomic: CACCAAATCCCTACAGATACCCTATTGGTAAAAAGCGTATGCAGCCACTGgtgagtccta ... tcttcttcagGGAATACTTGTCTTTGCCTCTGTTATGGCGACACTTGGCCTTCAGATCATC