1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGGACAAGATGCTACAGGCGAAGAAGTAATCAAACCTTATACCCCTACTACATTGGATTCTGATCTAGGGCATTTTGAGCTTGTTATTAAGgtaaattgtattcagttctttatactgtatgaatgcttgtttgtcaatcctggaacatatcgttatgtgccacacaagcaggatttgccatttaacttttctcataatgcag
species | Oryza sativa |
transcript | LOC_Os01g59930.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCCCTACTACATTGGATTCTGATCTAGGGCATTTTGAGCTTGTTATTAAG ATGTACCCTCAAGGAAGAATGTCACACCATTTCCGTGAAATGAAAGTTGGTEST: gi|58684839|gb|CK073526.1|CK073526
genomic: CCCCTACTACATTGGATTCTGATCTAGGGCATTTTGAGCTTGTTATTAAGgtaaattgta ... cataatgcagATGTACCCTCAAGGAAGAATGTCACACCATTTCCGTGAAATGAAAGTTGGT
EST: CCCCTACTACATTGGATTCTGATCTAGGGCATTTTGAGCTTGTTATTAAG ATGTACCCTCAAGGAAGAATGTCACACCATTTCCGTGAAATGAAAGTTGGTEST: gi|58595179|gb|CF993487.1|CF993487
genomic: CCCCTACTACATTGGATTCTGATCTAGGGCATTTTGAGCTTGTTATTAAGgtaaattgta ... cataatgcagATGTACCCTCAAGGAAGAATGTCACACCATTTCCGTGAAATGAAAGTTGGT
EST: CCCCTACTACATTGGATTCTGATCTAGGGCATTTTGAGCTTGTTATTAAG ATGTACCCTCAAGGAAGAATGTCACACCATTTCCGTGAAATGAAAGTTGGTEST: gi|427743|gb|D23879.1|D23879
genomic: CCCCTACTACATTGGATTCTGATCTAGGGCATTTTGAGCTTGTTATTAAGgtaaattgta ... cataatgcagATGTACCCTCAAGGAAGAATGTCACACCATTTCCGTGAAATGAAAGTTGGT
EST: CCCCTACTACATTGGATTCTGATCTAGGGCATTTTGAGCTTGTTATTAAG ATGTACCCTCAAGGAAGAATGTCACACCATTTCCGTGAAATGAAAGTTGGTEST: gi|117244284|gb|CT843075.1|CT843075
genomic: CCCCTACTACATTGGATTCTGATCTAGGGCATTTTGAGCTTGTTATTAAGgtaaattgta ... cataatgcagATGTACCCTCAAGGAAGAATGTCACACCATTTCCGTGAAATGAAAGTTGGT
EST: CCCCTACTACATTGGATTCTGATCTAGGGCATTTTGAGCTTGTTATTAAG ATGTACCCTCAAGGAAGAATGTCACACCATTTCCGTGAAATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTAGGGCATTTTGAGCTTGTTATTAAGgtaaattgta ... cataatgcagATGTACCCTCAAGGAAGAATGTCACACCATTTCCGTGAAATGAAAGTTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGACAAGATGCTACAGGCGAAGAAGTAATCAAACCTTATACCCCTACTACATTGGATTCTGATCTAGGGCATTTTGAGCTTGTTATTAAGgtaaattgtattcagttctttatactgtatgaatgcttgtttgtcaatcctggaacatatcgttatgtgccacacaagcaggatttgccatttaacttttctcataatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT