1 5' 3' | 2 5' 3' | 3 5' 3' |
GCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGgtgaacccccccccccctccgccatacaacttgttcccatggtattctttggcggtaccattataaattcccttaaacaagtaaatatgaacctacaaca...
species | Oryza sativa |
transcript | LOC_Os01g57360.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGCAAGAGTTGAAGAGCTCCCTAGATGCAG TTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATAEST: gi|86261047|gb|CI004612.1|CI004612
genomic: TTGCAAGAGTTGAAGAGCTCCCTAGATGCAGgtgaaccccc ... attcatgcagTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATA
EST: AAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAG TTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATAEST: gi|88234667|gb|CI234516.1|CI234516
genomic: AAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGgtgaaccccc ... attcatgcagTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATA
EST: AAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAG TTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATAEST: gi|88991530|gb|CI019708.1|CI019708
genomic: AAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGgtgaaccccc ... attcatgcagTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATA
EST: CTTTGCTGTTTGCAAGAGTTGAAGAGCTCCTTAGATGCAG TTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATAEST: gi|58609996|gb|CK038029.1|CK038029
genomic: CTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGgtgaaccccc ... attcatgcagTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATA
EST: GGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAG TTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATAEST: gi|86870579|gb|CI320675.1|CI320675
genomic: GGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGgtgaaccccc ... attcatgcagTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATA
EST: CCCTAGATGCAG TTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATAEST: gi|84117022|gb|CD150789.1|CD150789
genomic: CCCTAGATGCAGgtgaaccccc ... attcatgcagTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATA
EST: AAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAG TTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATAEST: gi|86418700|gb|CI053501.1|CI053501
genomic: AAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGgtgaaccccc ... attcatgcagTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATA
EST: AAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAG TTTATGATGTCACNATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATAEST: gi|14980756|gb|BI305434.1|BI305434
genomic: AAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGgtgaaccccc ... attcatgcagTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATA
EST: AAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAG TTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATAEST: gi|29685466|gb|CB681741.1|CB681741
genomic: AAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGgtgaaccccc ... attcatgcagTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATA
EST: AAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAG TTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATAEST: gi|86430774|gb|CI083197.1|CI083197
genomic: AAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGgtgaaccccc ... attcatgcagTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATA
EST: AGTTGAAGAGCTCCCTAGATGCAG TTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATAEST: gi|29687577|gb|CB683852.1|CB683852
genomic: AGTTGAAGAGCTCCCTAGATGCAGgtgaaccccc ... attcatgcagTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATA
EST: AAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAG TTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATA
genomic: AAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGgtgaaccccc ... attcatgcagTTTATGATGTCACAATAGCGTATAAGCATCGCCTGCCAGATTTTCTGGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGTTTGCAAGAGTTGAAGAGCTCCCTAGATGCAGgtgaacccccccccccctccgccatacaacttgttcccatggtattctttggcggtaccattataaattcccttaaacaagtaaatatgaacctacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccccc