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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACAGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGGATTTGCATTTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATGgtaagtagctttatttttggaaaaaaaataactgtgccatgtattttggattaatctggatgttttgactgacag

Basic information

species Oryza sativa
transcript LOC_Os01g56820.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56820.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G085602_T03 (Zea mays), 5'ss of exon 3
TGACAGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGGATTTGCATTTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATGgtaagtagctttatttttggaaaaaaaat---aactgtgccatgtattttggattaatctggatgttttgactgacag
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TGACAGAAGAAATGGCACCTAACTTGCTAGAGAATGATATGGATCTACATTTTGATCTTCTTAGTCTCCACTTCATTGAGCTAGTTCGCTCCAAAAAATTgtgagtttgtgaattttttaactaggattgaaaactatttttacatccttttattaacctggctattttgattgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40486859|gb|BX898175.1|BX898175
EST:     TTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATG                         CACAGAAGCTCTTGAGTTTGGTCAGAAAAAGTTGACGCCATTTGGGAAAGT
genomic: TTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATGgtaagtagct ... tgactgacagCACAGAAGCTCTTGAGTTTGGTCAGAAAAAGTTGACGCCATTTGGGAAAGT
EST: gi|117234957|gb|CT847981.1|CT847981
EST:     TTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATG                         CACAGAAGCTCTTGAGTTTGGTCAGAAAAAGTTGACGCCATTTGGGAAAGT
genomic: TTTGATCTTTTAAGTCTTCACTTCATTGAGTTAGTTCGTTCTAGAAAATGgtaagtagct ... tgactgacagCACAGAAGCTCTTGAGTTTGGTCAGAAAAAGTTGACGCCATTTGGGAAAGT