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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGCTAGGCGTGAAGCTATTGATGCTACATTGGAGCGCAACCCTGATGCATTCAGGCCTAAGATTGGGAGTAGCCCGCATGCTAACCGGAATAATATGgtatgttttgagttccatgtcttaaatgagtagttagatatacatgctaagggtgttcaataattgatgcccgttacttctggagtattaatgattcata...

Basic information

species Oryza sativa
transcript LOC_Os01g55580.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g55580.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G059678_T01 (Zea mays), 5'ss of exon 3
---GACTGCTAGGCGTGAAGCTATTGATGCTACATTGGAGCGCAACCCTGATGCATTCAGGCCTAAGATTGGGAGTAGCCCGCATGCTAACCGGAATAATATGgtatgttttgagttccatgtcttaaatgagtagttagatatacatgctaagggtgttcaataattgatgcccgttacttctggagtattaatgattcata-----
   |  ||| |||||||||||| |||| |||| |||||| || || || ||||| |||||||||||||||||||| ||||| |||    |  ||||||||   |||| || || | ||||  | ||    |  || ||   | || | |  ||   |  |   || | | |  || ||   | |    |||   | || || |     
TGAGGTTGCCAGGCGTGAAGCTGTTGAAGCTATATTGGATCGTAATCCAGATGCTTTCAGGCCTAAGATTGGGAGCAGCCCACATATGCATAGGAATAAT-

upper sequence: LOC_Os01g55580.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G104246_T01 (Zea mays), 5'ss of exon 3
---GACTGCTAGGCGTGAAGCTATTGATGCTACATTGGAGCGCAACCCTGATGCATTCAGGCCTAAGATTGGGAGTAGCCCGCATGCTAACCGGAATAATATGgtatgttttgagttccatgtcttaaatgagtagttagatatacatgctaagggtgttcaataattgatgcccgttacttctggagtattaatgattcata----------
   |  ||| || |||||||||||||| |||||||||||||| || || ||||| || ||||||||||| ||||| || || ||| | ||  ||||||||   ||||||| || | ||||  | ||    | |||||||      | | |||| ||    || | |||| |     || | | || ||| | ||| | | |||          
TGAGGTTGCCAGACGTGAAGCTATTGAAGCTACATTGGAGCGTAATCCAGATGCTTTTAGGCCTAAGATCGGGAGCAGTCCACATACGAATAGGAATAAT-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29621005|gb|CB626016.1|CB626016
EST:     CATTCAGGCCTAAGATTGGGAGTAGCCCGCATGCTAACCGGAATAATATG                         GAGGCGGCTGGTGATCTTCCATTAGTTGGGAAGCATAATAAAGGGTGCCAC
genomic: CATTCAGGCCTAAGATTGGGAGTAGCCCGCATGCTAACCGGAATAATATGgtatgttttg ... aaattgccagGAGGCGGCTGGTGATCTTCCATTAGTTGGGAAGCATAATAAAGGGTGCCAC