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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCCTGCCCACGGTGATCGGCGGATCCTACGCGTTCGTGGTCCCGATAATGGCCATCATACAGGACTCATCGCTCGCCGCCATACCCGACGACCACGAGgtaagcagagcaggcggacgctcttctttctgtccatccatccgtccaatcgcctctactgttttagattaggcgtgtctgatcacaatcatctgctgttcatctctctctctctctctctctctgagcag

Basic information

species Oryza sativa
transcript LOC_Os01g55500.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g55500.4 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G437859_T03 (Zea mays), 5'ss of exon 3
GCGCCTGCCCACGGTGATCGGCGGATCCTACGCGTTCGTGGTCCCGATAATGGCCATCATACAGGACTCATCGCTCGCCGCCATACCCGACGACCACGAGgtaagcag-agcaggcggacgctcttctttctgtccatccatccgtccaatcgcctctactgttttagattaggcgtgtctgatcacaatcatctgctgttcatctctctctctctctctctctctgagcag
 || ||||| ||||| |||||||| ||||||||||||||  ||||||||||||||||||| |||||| | |||||  | |  ||||||||||  || ||||| ||||| |||||          ||   | || |  ||| | |  ||  | || |||  ||     | |  ||||||| ||       | |||||      |  | | | || |  ||| |   |||||||
CCGGCTGCCGACGGTCATCGGCGGCTCCTACGCGTTCGTCATCCCGATAATGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagcagcag----------ttgcctgtgactgtccgttctgcctgttgcttctgatggaggcggt--ggcgtgtgtg-------taatctga-----aagtttttttccccatctgtggttgagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58599082|gb|CK009610.1|CK009610
EST:     TGGCCATCATACAGGACTCATCGCTCGCCGCCATACCCGACGACCACGAG                         AGGTTCCTTCACACCATGAGGGCGATACAGGGGGCACTCATCGTGTCCTCC
genomic: TGGCCATCATACAGGACTCATCGCTCGCCGCCATACCCGACGACCACGAGgtaagcagag ... ctctgagcagAGGTTCCTTCAGACCATGAGGGCGATACAGGGGGCACTCATCGTGTCCTCC
EST: gi|88358900|gb|CI619404.1|CI619404
EST:     TGGCCATCATAAAGGACTCATCGCTCGCCGCCATACCCGACGACCACGAG                         AGGTTCCTTCAGACCATGAGGGCGATACAGGGGGCACTCATCGTGTCCTCC
genomic: TGGCCATCATACAGGACTCATCGCTCGCCGCCATACCCGACGACCACGAGgtaagcagag ... ctctgagcagAGGTTCCTTCAGACCATGAGGGCGATACAGGGGGCACTCATCGTGTCCTCC