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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctattctttcccaccttaccttagtctcatgcgtgcatctcggtgctttcctttctgcagagtataatggcgtattaatatcaatgttgagcgaa...

Basic information

species Oryza sativa
transcript LOC_Os01g54870.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g54870.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ38689 (Selaginella moellendorffii), 5'ss of exon 3
GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtga---tctattctttcccaccttacctt-agtctcatgcgtgcatctcggtgctttcctttctgcagagtataatggcgtattaatatcaatgttgagcgaa
||||||||| |||||||| |||||||||||||||    |||| |||||||| || ||||||||||| |   ||| |  ||| |   |||  ||  || || |   |||         |   | | |    |||                                   
GTACTTCCTTCGCAAGCTCAAGAAGGTGAAGAAGTCTCACGGCCAGATCCTCGCTATCAACGAGgtaaagttctttctttttctttcttttctcgagccttacaagtgagaactttggaacttcgtgacacag-----------------------------------

upper sequence: LOC_Os01g54870.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ31458 (Selaginella moellendorffii), 5'ss of exon 3
GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctattctttcccaccttaccttagtctcatgcgtgcatctcggtgctttcctttctgcagagtataatggcgtattaatatcaatgttgagcgaa
||||||||| |||||||| |||||||||||||||    |||| |||||||| || ||||||||||| |    |||||||      |  |||      ||||      ||      |      | ||  ||   |  || |  |                     
GTACTTCCTTCGCAAGCTCAAGAAGGTGAAGAAGTCTCACGGCCAGATCCTCGCTATCAACGAGgtaaa--gttctttctttttctttctttcctcgatgctctagccttacaagtgagaactttg--gaacttcgtgacacag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27554177|gb|CA998077.1|CA998077
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|8527792|gb|AU092607.1|AU092607
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|163920059|gb|EG712013.1|EG712013
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88426781|gb|CI584144.1|CI584144
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|14980795|gb|BI305473.1|BI305473
EST:     AGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACGACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88692748|gb|CI736323.1|CI736323
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|30228410|gb|CB966300.1|CB966300
EST:     GCTGAAGAAGGTGAAGAAGAGCAACGGGCAGAT-CGTGCCACTCAACGAG                         ATTTCTGAGAAGAACCCAACGACTATCAAGAACTATGGCATCTGGCTGCG
genomic: GCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCA-TCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCG
EST: gi|58603976|gb|CK014504.1|CK014504
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACGACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|15854102|gb|BI806898.1|BI806898
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCCACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88591210|gb|CI708131.1|CI708131
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|218487192|gb|FG947791.1|FG947791
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACGACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|33660274|gb|CF291241.1|CF291241
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|86870246|gb|CI319352.1|CI319352
EST:     AGCTGAAGAAGGTGAAGAAGAGCAAC-GGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|218491613|gb|FG954645.1|FG954645
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACGACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88398227|gb|CI588115.1|CI588115
EST:     AGCTGAAGAATGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|38480189|gb|CF964278.1|CF964278
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACGACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|163920061|gb|EG712015.1|EG712015
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|2311521|gb|C27676.1|C27676
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88579846|gb|CI691836.1|CI691836
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88403881|gb|CI611536.1|CI611536
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88734587|gb|CI758095.1|CI758095
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATC
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATC
EST: gi|58591145|gb|CF989453.1|CF989453
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACGACTATCACGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|218502988|gb|FG954162.1|FG954162
EST:     GGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACGACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: GGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88356780|gb|CI619266.1|CI619266
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88572140|gb|CI663711.1|CI663711
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88308773|gb|CI653660.1|CI653660
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|58681970|gb|CK070657.1|CK070657
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACGACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88422346|gb|CI689157.1|CI689157
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88743392|gb|CI766900.1|CI766900
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|33817115|gb|CF334396.1|CF334396
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|287211|gb|D16015.1|D16015
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|30226603|gb|CB964495.1|CB964495
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACGACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|30229141|gb|CB967032.1|CB967032
EST:     GCTGAAGAAAGGTGAAGAAGAGCAACGGCCAGATCCTCGCCATCAACGAG                         ATTTCTGAGAAGAACCCAACGACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: GCTGAAG-AAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88720686|gb|CI743985.1|CI743985
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|89198515|gb|CI016600.1|CI016600
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88591569|gb|CI709609.1|CI709609
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|55411639|gb|CV724015.1|CV724015
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88737708|gb|CI761216.1|CI761216
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|44675111|gb|CR288545.1|CR288545
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACGACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88343377|gb|CI621745.1|CI621745
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88333775|gb|CI643807.1|CI643807
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88328846|gb|CI646921.1|CI646921
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|27576862|gb|CA999556.1|CA999556
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGC
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGC
EST: gi|88426140|gb|CI574023.1|CI574023
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88422928|gb|CI615228.1|CI615228
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|27577262|gb|CA999956.1|CA999956
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88725288|gb|CI748547.1|CI748547
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAAAGAG                         ATTTTTGAGAAGAAACCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88334861|gb|CI648636.1|CI648636
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|218488907|gb|FG956921.1|FG956921
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACGACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|86601364|gb|CI251738.1|CI251738
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|4714280|gb|AU058247.1|AU058247
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG                         ATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 70 (upstream exon), 74 (downstream exon)
Score: 32

GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctatt ... ttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGTTACCAGAGTAGGACTGGCTACCACAACATGTACAAGGAGTACCGTGATA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAGgtgatctattctttcccaccttaccttagtctcatgcgtgcatctcggtgctttcctttctgcagagtataatggcgtattaatatcaatgttgagcgaa

- - - - - - - AGCTGA
- - - - - - - - CTGAAG
- - - - - - - -  TGAAGA
- - - - - - - - -  AAGAAG
- - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcccacc