1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAGAGAGTTAGGCTTCACCTTTTCTTTCCCAGTGCACCAAACATCAATATCATCAGGCACTCTTATTAAGTGGACAAAGGGATTTTCCATCAATGGCACGgtaaaattcgaatggccttagtataaatttcatggctaaatgatctaggaattatttattaccttgacgatcagtcttgattagaaaccacgttgtgtca...
species | Oryza sativa |
transcript | LOC_Os01g53930.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CATCAGGCACTCTTATTAAGTGGACAAAGGGATTTTCCATCAATGGCACG GTGGGGGAAGATGTTGTGGCTGAATTGAGCAGGGCTATGGAAAGGCAAGGGEST: gi|58664374|gb|CK053060.1|CK053060
genomic: CATCAGGCACTCTTATTAAGTGGACAAAGGGATTTTCCATCAATGGCACGgtaaaattcg ... gtgaactcagGTGGGGGAAGATGTTGTGGCTGAATTGAGCAGGGCTATGGAAAGGCAAGGG
EST: CATCAGGCACTCTTATTAAGTGGACAAAGGGATTTTCCATCAATGGCACG GTGGGGGAAGATGTTGTGGCTGAATTGAGCAGGGCTATGGAAAGGCAAGGGEST: gi|58663006|gb|CK051692.1|CK051692
genomic: CATCAGGCACTCTTATTAAGTGGACAAAGGGATTTTCCATCAATGGCACGgtaaaattcg ... gtgaactcagGTGGGGGAAGATGTTGTGGCTGAATTGAGCAGGGCTATGGAAAGGCAAGGG
EST: CATCAGGCACTCTTATTAAGTGGACAAAGGGATTTTCCATCAATGGCACG GTGGGGGAAGATGTTGTGGCTGAATTGAGCAGGGCTATGGAACAGGCAAGGEST: gi|58655773|gb|CK044453.1|CK044453
genomic: CATCAGGCACTCTTATTAAGTGGACAAAGGGATTTTCCATCAATGGCACGgtaaaattcg ... gtgaactcagGTGGGGGAAGATGTTGTGGCTGAATTGAGCAGGGCTATGGAA-AGGCAAGG
EST: CATCAGGCACTCTTATTAAGTGGACAAAGGGATTTTCCATCAATGGCACG GTGGGGGAAGATGTTGTGGCTGAATTGAGCAGGGCTATGGAAAGGCAAGGGEST: gi|58661416|gb|CK050096.1|CK050096
genomic: CATCAGGCACTCTTATTAAGTGGACAAAGGGATTTTCCATCAATGGCACGgtaaaattcg ... gtgaactcagGTGGGGGAAGATGTTGTGGCTGAATTGAGCAGGGCTATGGAAAGGCAAGGG
EST: CATCAGGCACTCTTATTAAGTGGACAAAGGGATTTTCCATCAATGGCACG GTGGGGGAAGATGTTGTGGCTGAATTGAGCAGGGCTATGGAAAGGCAAGGG
genomic: CATCAGGCACTCTTATTAAGTGGACAAAGGGATTTTCCATCAATGGCACGgtaaaattcg ... gtgaactcagGTGGGGGAAGATGTTGTGGCTGAATTGAGCAGGGCTATGGAAAGGCAAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAGAGTTAGGCTTCACCTTTTCTTTCCCAGTGCACCAAACATCAATATCATCAGGCACTCTTATTAAGTGGACAAAGGGATTTTCCATCAATGGCACGgtaaaattcgaatggccttagtataaatttcatggctaaatgatctaggaattatttattaccttgacgatcagtcttgattagaaaccacgttgtgtca
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