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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCCGTGAGTGAGAGGAAGAAAGGATGCTGCCCCCCACCACCACCACCACATGGTGCTCCTGCTACACCTGCGCGCAACAGACCACAGACCCAGGGAAGgtactgatagcctatatggtgctttttccatcttttctgctctcagccaaggaacacatgctcgtttattcctgtcactcatttatagttcattcgaagg...

Basic information

species Oryza sativa
transcript LOC_Os01g53880.6
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29672643|gb|CB668918.1|CB668918
EST:     CATGGTGCTCTTGCTACACTTGCGCGCAACAGACCACAGACCCAGGGAAG                         AGGAGCTGCAGCACCAGTGGTTGGTTGGCCTCCAATTCGATCCTTCAGGAG
genomic: CATGGTGCTCCTGCTACACCTGCGCGCAACAGACCACAGACCCAGGGAAGgtactgatag ... ctgtttgtagAGGAGCTGCAGCACCAGTGGTTGGTTGGCCTCCAATTCGATCCTTCAGGAG
EST: gi|29643256|gb|CB648263.1|CB648263
EST:     AGACCCAGGGAAG                         AGGAGCTGCAGCACCAGTGGTTGGTTGCCCTCCAATTCGATCCTTCAGGAG
genomic: AGACCCAGGGAAGgtactgatag ... ctgtttgtagAGGAGCTGCAGCACCAGTGGTTGGTTGGCCTCCAATTCGATCCTTCAGGAG
EST: gi|58695140|gb|CK083827.1|CK083827
EST:     CATGGTGCTCCTGCTACACCTGCGCGCAACAGACCACAGACCCAGGGAAG                         AGGAGCTGCAGCACCAGTGGTTGGTTGGCCTCCAATTCGATCCTTCAGGAG
genomic: CATGGTGCTCCTGCTACACCTGCGCGCAACAGACCACAGACCCAGGGAAGgtactgatag ... ctgtttgtagAGGAGCTGCAGCACCAGTGGTTGGTTGGCCTCCAATTCGATCCTTCAGGAG
EST: gi|29639753|gb|CB644762.1|CB644762
EST:     CATGGTGCTCNTGCTACACCTGCGCGCAACAGACCACAGACCCAGGGAAG                         AGGAGCTGCAGCACCAGTGGTTGGTTGGCCTCCAATTCGATCCTTCAGGAG
genomic: CATGGTGCTCCTGCTACACCTGCGCGCAACAGACCACAGACCCAGGGAAGgtactgatag ... ctgtttgtagAGGAGCTGCAGCACCAGTGGTTGGTTGGCCTCCAATTCGATCCTTCAGGAG