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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCCGTGAGTGAGAGGAAGAAAGGATGCTGCCCCCCACCACCACCACCACATGGTGCTCCTGCTACACCTGCGCGCAACAGACCACAGACCCAGGGAAGgtactgatagcctatatggtgctttttccatcttttctgctctcagccaaggaacacatgctcgtttattcctgtcactcatttatagttcattcgaagg...

Basic information

species Oryza sativa
transcript LOC_Os01g53880.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29675173|gb|CB671448.1|CB671448
EST:     CATGGTGCTCCTGCTACACCTGCGCGCAACAGACCACAGACCCAGGGAAG                         AGGAGCTGCAGCACCAGTGGTTGGTTGGCCTCCAATTCGATCCTTCAGGAG
genomic: CATGGTGCTCCTGCTACACCTGCGCGCAACAGACCACAGACCCAGGGAAGgtactgatag ... ctgtttgtagAGGAGCTGCAGCACCAGTGGTTGGTTGGCCTCCAATTCGATCCTTCAGGAG
EST: gi|4715020|gb|AU056137.1|AU056137
EST:     ATGGGTGCTCCTGCTACACCTGCGCGCAACAGACCACAGACCCAGGGAGG                         AGGAGCTGCAGCACCAGTGGTTGGTTGGCCTCCAATTCGATCCTTCAGGAG
genomic: ATGG-TGCTCCTGCTACACCTGCGCGCAACAGACCACAGACCCAGGGAAGgtactgatag ... ctgtttgtagAGGAGCTGCAGCACCAGTGGTTGGTTGGCCTCCAATTCGATCCTTCAGGAG
EST: gi|58695140|gb|CK083827.1|CK083827
EST:     CATGGTGCTCCTGCTACACCTGCGCGCAACAGACCACAGACCCAGGGAAG                         AGGAGCTGCAGCACCAGTGGTTGGTTGGCCTCCAATTCGATCCTTCAGGAG
genomic: CATGGTGCTCCTGCTACACCTGCGCGCAACAGACCACAGACCCAGGGAAGgtactgatag ... ctgtttgtagAGGAGCTGCAGCACCAGTGGTTGGTTGGCCTCCAATTCGATCCTTCAGGAG
EST: gi|4714667|gb|AU055784.1|AU055784
EST:     ATGGTGCTCCCTGCTACACC-GCGCGCAACAGACCACAGACCCAGGGAAG                         AGGAGCTGCAGCACCAGTGGTTGGTTGGCCTCCAATTCGATCCTTCAGGAG
genomic: ATGGTGCT-CCTGCTACACCTGCGCGCAACAGACCACAGACCCAGGGAAGgtactgatag ... ctgtttgtagAGGAGCTGCAGCACCAGTGGTTGGTTGGCCTCCAATTCGATCCTTCAGGAG
EST: gi|29675175|gb|CB671450.1|CB671450
EST:     CATGGTGCTCCTGCTACACCTGCGCGCAACAGACCACAGACCCAGGGAAG                         AGGAGCTGCAGCACCAGTGGTTGGTTGGCCTCCAATTCGATCCTTCAGGAG
genomic: CATGGTGCTCCTGCTACACCTGCGCGCAACAGACCACAGACCCAGGGAAGgtactgatag ... ctgtttgtagAGGAGCTGCAGCACCAGTGGTTGGTTGGCCTCCAATTCGATCCTTCAGGAG