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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAGTAAACATTGCCCTTTCTCTGAGATATGAGATCAATAGAGGTTTTGCAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaactgactctttatcctcggtgatgcataacattaggcacttgttgattgcctgctgatgtgccttgttatctttctatcatcag

Basic information

species Oryza sativa
transcript LOC_Os01g53520.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g53520.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G002786_T01 (Zea mays), 5'ss of exon 3
GACAGTAAACATTGCCCTTTCTCTGAGATATGAGATCAATAGAGGTTTTGCAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaactgactctttatcctcggtgatgcata-acattaggcacttgttgattgcctgctgatgt---gccttgttatctttctatcat-cag
| | || ||  |||| ||  | |||||||| |||||||| || || ||||| ||||||||||||||||| ||||| |  ||||| ||||| ||||| ||||||||||   |  || |      |  |||     |     |  ||   || ||| |  |  ||||||||   ||  | ||   ||||| |  | |||
GTCTGTTAATGTTGCACTGACACTGAGATACGAGATCAACAGGGGCTTTGCTACCTTGAGGGAGATTGGACATGGACACGATCTAAAGAAATTCCTAATTgtatgttggttctctttgggcattttgtgcctagtgtgtgtgtggatattcttggtatcgagctgatgtcctgcaattttgcttttctttattgcag

upper sequence: LOC_Os01g53520.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G031308_T02 (Zea mays), 5'ss of exon 3
GACAGTAAACATTGCCCTTTCTCTGAGATATGAGATCAATAGAGGTTTTGCAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaactgactctttatcctcggtgatgcataacattaggcacttgttgattgcctgctgatgtgccttgttatctttctatcatcag
| | || ||  ||||||| || ||||||||||||||||| || || ||||| ||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||    |  ||| | ||  || || ||   |   | || || || ||| |  | |||||||  |||| |   | |||   |||    
GGCTGTTAATGTTGCCCTGTCACTGAGATATGAGATCAACAGGGGCTTTGCTACCTTAAGGGAGATTGGGCATGGCCGTGATCTGAAGAAATTCCTAATTgtatgtt----ggttctctttcagcgttg-tgtccagtgtaagacaattcttggtatcgtgctgat--gcctggcacttttttcttcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218503591|gb|FG957184.1|FG957184
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGCAGCAGCTGCAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|33682758|gb|CF310997.1|CF310997
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|29663265|gb|CB659540.1|CB659540
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|218484106|gb|FG945297.1|FG945297
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGCAGCAGCTGCAACT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACT
EST: gi|33691044|gb|CF319283.1|CF319283
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|33692227|gb|CF320466.1|CF320466
EST:     CAACCTTGAGGGAGATTGGTCATGTCCGTGATCTGATTAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|8527575|gb|AU092390.1|AU092390
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|7608733|gb|AU090514.1|AU090514
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTNACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|33661977|gb|CF292944.1|CF292944
EST:     GAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: GAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|29663264|gb|CB659539.1|CB659539
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|33688039|gb|CF316278.1|CF316278
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|11564763|gb|AU165399.1|AU165399
EST:     -ACCNTTGAGGGAGATTGGTCATGCCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: AACC-TTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|8859759|gb|AU097077.1|AU097077
EST:     CCTTGAGGGAGATTGGTCATGCCCGTGATCTGAAGAAGTCCCNCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|29688123|gb|CB684398.1|CB684398
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|8859167|gb|AU096485.1|AU096485
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|7608672|gb|AU090454.1|AU090454
EST:     ACCCTTGAGGGAGATTGGTCATGCCCGTGATCTGAAGAAGTTCCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTT
genomic: AACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTT-CCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTT
EST: gi|163922879|gb|EG712730.1|EG712730
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|2311112|gb|C27267.1|C27267
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|5002965|gb|AU068074.1|AU068074
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|88275849|gb|CI396453.1|CI396453
EST:     AACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: AACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|33687181|gb|CF315420.1|CF315420
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|29646748|gb|CB651755.1|CB651755
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|2312302|gb|C28457.1|C28457
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|218485421|gb|FG945032.1|FG945032
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGCAGCAGCTGCAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|58695411|gb|CK084098.1|CK084098
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGCAGCAGCTGCAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|10109165|gb|AU065308.2|AU065308
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCA
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCA
EST: gi|3768343|gb|AU032370.1|AU032370
EST:     TCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTNGCAGCTGTAACTTT
genomic: TCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|33689175|gb|CF317414.1|CF317414
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAACAGCTGTAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|33800224|gb|CF325977.1|CF325977
EST:     CGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|58686008|gb|CK074695.1|CK074695
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGCAGCAGCTGCAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|58682578|gb|CK071265.1|CK071265
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTG
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTG
EST: gi|10794862|gb|AU108828.1|AU108828
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|218483599|gb|FG956155.1|FG956155
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGCAGCAGCTGCAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|33678278|gb|CF306517.1|CF306517
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCT
EST: gi|33693971|gb|CF322210.1|CF322210
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGATGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|33680175|gb|CF308414.1|CF308414
EST:     GAAGAAGTTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: GAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
EST: gi|89191020|gb|CI392873.1|CI392873
EST:     CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAATTCCTCATT                         GTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT
genomic: CAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 70 (downstream exon)
Score: 186

GACAGTAAACATTGCCCTTTCTCTGAGATATGAGATCAATAGAGGTTTTGCAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaac ... ctatcatcagGTGATCGCTGGACTCTGGATTCTGTCAGTTCTTGGTAGCAGCTGTAACTTTTTGACTTTGTTCTACATAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACAGTAAACATTGCCCTTTCTCTGAGATATGAGATCAATAGAGGTTTTGCAACCTTGAGGGAGATTGGTCATGGCCGTGATCTGAAGAAGTTCCTCATTgtatgttaactgactctttatcctcggtgatgcataacattaggcacttgttgattgcctgctgatgtgccttgttatctttctatcatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT