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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCCGCGAGGTACAGAAGGTGCGATCAGTATTGAGGGTACTCTAGCTGGAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAGgtaaattatttatacagtaaactttgcagaacagcagatattttggaaaacctacagatttagcactgaattgtcacagaacttatatggaaatgacagtgatcagtgaatatatagtccttaccgtttgctccaatacactcgtatgattattgaaaaaaataaaaccatgcattttatcgcag

Basic information

species Oryza sativa
transcript LOC_Os01g52864.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g52864.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G166383_T03 (Zea mays), 5'ss of exon 2
TGTTCCGCGAGGTACAGAAGGTGCGATCAGTATTGAGGGTACTCTAGCTGGAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAGgtaaattatttatacagtaaactttgcagaacagcagatattttggaaaacctacagatttagcactgaattgtcacagaacttatatggaaatgacagtgatcagtgaatatatagtccttaccgtttgctccaatacactcgtatgattattgaaaaaaataaaaccatgcattttatcgcag
||||||  |||||||||||||||| |||||||||||||||||| | ||||||||||| || ||  |  |||||||| ||| ||||||||| || ||||||||| ||| ||| |     ||| |  |||  |    | | ||| | |    |||     ||||| |    | |||  |   | |   || | ||    ||  ||                                                                                  
TGTTCCTAGAGGTACAGAAGGTGCAATCAGTATTGAGGGTACTATTGCTGGAATTCTAGCGTCTGTGTTTCTTGCAGGTGCTGGTTATCTTCTTGGGCAGgtacattttttttgtttgaaattcagcaccatcagaaacattcttggt--cctgtc--tttagtataccagtgtttctacagtatgatagtaaatctagaaatt---------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25803882|gb|CA759843.1|CA759843
EST:     GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAG                         GTTAATGTATCCCAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
genomic: GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAGgtaaattatt ... tttatcgcagGTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
EST: gi|88847576|gb|CI016069.1|CI016069
EST:     GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAG                         GTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
genomic: GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAGgtaaattatt ... tttatcgcagGTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
EST: gi|86259218|gb|CI010519.1|CI010519
EST:     GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAG                         GTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
genomic: GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAGgtaaattatt ... tttatcgcagGTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
EST: gi|86496138|gb|CI138771.1|CI138771
EST:     GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAG                         GTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
genomic: GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAGgtaaattatt ... tttatcgcagGTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
EST: gi|89189983|gb|CI013550.1|CI013550
EST:     GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAG                         GTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
genomic: GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAGgtaaattatt ... tttatcgcagGTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
EST: gi|88985606|gb|CI016315.1|CI016315
EST:     GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAG                         GTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
genomic: GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAGgtaaattatt ... tttatcgcagGTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
EST: gi|88509177|gb|CI436683.1|CI436683
EST:     GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAG                         GTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
genomic: GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAGgtaaattatt ... tttatcgcagGTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
EST: gi|86833632|gb|CI337206.1|CI337206
EST:     CATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAG                         GTTAATGTATCACAAGGCCCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
genomic: CATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAGgtaaattatt ... tttatcgcagGTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
EST: gi|29658377|gb|CB654652.1|CB654652
EST:     GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAG                         GTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
genomic: GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAGgtaaattatt ... tttatcgcagGTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
EST: gi|88839669|gb|CI015760.1|CI015760
EST:     GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAG                         GTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
genomic: GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAGgtaaattatt ... tttatcgcagGTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
EST: gi|58693851|gb|CK082538.1|CK082538
EST:     GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAG                         GTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
genomic: GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAGgtaaattatt ... tttatcgcagGTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
EST: gi|89178912|gb|CI391910.1|CI391910
EST:     GCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAG                         GGTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
genomic: GCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAGgtaaattatt ... tttatcgcagGTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
EST: gi|88209808|gb|CI209657.1|CI209657
EST:     GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAG                         GTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT
genomic: GAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCAGgtaaattatt ... tttatcgcagGTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAAT