Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATCGTGAAACTTCAAGCTTTAGTTCGTGGAAGAAATGTTAGACTCTCCGGTGCTTCCATTCAATTTGTTGTGAAGTCCGGCCAACATAAGTTTCTGgtaagtatcttgacatgtggcagttcaaatatttgatttcttgtatccttccctgcttttctacctgttctatttgtattatgttaaacctctgtttcaa...

Basic information

species Oryza sativa
transcript LOC_Os01g51840.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g51840.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AC207628.4_FGT011 (Zea mays), 5'ss of exon 3
GTTGATCGTGAAACTTCAAGCTTTAGTTCGTGGAAGAAATGTTAGACTCTCCGGTGCTTCCATTCAATTTGTTGTGAAGTCCGGCCAACATAAGTTTCTGgtaagtatcttgacatgtggcagttcaaatatttgatttcttgtatccttccctgcttttctacctgttctatttgtattatgttaaacctctgtttcaa----------------------------------------
|||||| |||||  |||| ||| |||||||||||||||||||||||||||| ||   |  ||| ||  |   ||||||||  || ||   ||| |||  ||||||| ||||        |  |  || | |||| || | |||| | | ||| | || ||||      ||  | ||   | |||    ||| || ||| |                                        
GTTGATTGTGAAGTTTCAGGCTCTAGTTCGTGGAAGAAATGTTAGACTCTCTGGCAGTCGCATGCAGCTCAATGTGAAGTTTGGTCAGAGTAACTTTGGGgtaagtttcttt-------gttgaccacacattt-atgttttgtttgcatccttactcttctttgaagtcagtgtgatgtttgtc--gcctatggttcgatgcaacattgctgagaaaatgtggtgcttgtacttttcag