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GACTAAATGTAAAACCACCTGCAGCAACTAGCAGACGTGTTAACGTACAGCAGGAACTATATGCACCAAGCCCAACGATCAGCCACAGAGgtacattcagaattatgatttggtttgttatcctatatatatctataaagttcatcgccactaagtgtagtcaatgctatttctctcctctcattaagtc...
species | Oryza sativa |
transcript | LOC_Os01g51290.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACTATATGCACCAAGCCCAACGATCAGCCACAGAG GTCTTGCTATTCCTCCACTTCCAACAACTTCACCCCCAGTTTTCCCACCTCEST: gi|86487913|gb|CI130546.1|CI130546
genomic: ACTATATGCACCAAGCCCAACGATCAGCCACAGAGgtacattcag ... tatgacgcagGTCTTGCTATTCCTCCACTTCCAACAACTTCACCCCCAGTTTTCCCACCTC
EST: CAGCCACAGAG GTCTTGCTATTCCTCCACTTCCAACAACTTCACCCCCAGTTTTCCCACCTCEST: gi|89169847|gb|CI110206.1|CI110206
genomic: CAGCCACAGAGgtacattcag ... tatgacgcagGTCTTGCTATTCCTCCACTTCCAACAACTTCACCCCCAGTTTTCCCACCTC
EST: TAACGTACAGCAGGAACTATATGCACCAAGCCCAACGATCAGCCACAGAG GTCTTGCTATTCCTCCACTGCCAACAACTTCACCCCCAGTTTTCCCACCTCEST: gi|396941635|gb|HO188292.1|HO188292
genomic: TAACGTACAGCAGGAACTATATGCACCAAGCCCAACGATCAGCCACAGAGgtacattcag ... tatgacgcagGTCTTGCTATTCCTCCACTTCCAACAACTTCACCCCCAGTTTTCCCACCTC
EST: TAACATACAGCAGGAACTATATGCACCAAGCCCAACGATCAGCCACAGAG GTCTTGCTATTCCTCCACTTCCAACAACTTCATCCCCAGTTTTCCCACCTCEST: gi|87009778|gb|CI310881.1|CI310881
genomic: TAACGTACAGCAGGAACTATATGCACCAAGCCCAACGATCAGCCACAGAGgtacattcag ... tatgacgcagGTCTTGCTATTCCTCCACTTCCAACAACTTCACCCCCAGTTTTCCCACCTC
EST: TATGCACCAAGCCCAACGATCAGCCACAGAG GTCTTGCTATTCCTCCACTTCCAACAACTTCACCCCCAGTTTTCCCACCTCEST: gi|86423364|gb|CI060937.1|CI060937
genomic: TATGCACCAAGCCCAACGATCAGCCACAGAGgtacattcag ... tatgacgcagGTCTTGCTATTCCTCCACTTCCAACAACTTCACCCCCAGTTTTCCCACCTC
EST: TAACGTACAGCAGGAACTATATGCACCAAGCCCAACGATCAGCCACAGAG GTCTTGCTATTCCTCCACTTCCAACAACTTCACCCCCAGTTTTCCCACCTC
genomic: TAACGTACAGCAGGAACTATATGCACCAAGCCCAACGATCAGCCACAGAGgtacattcag ... tatgacgcagGTCTTGCTATTCCTCCACTTCCAACAACTTCACCCCCAGTTTTCCCACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTAAATGTAAAACCACCTGCAGCAACTAGCAGACGTGTTAACGTACAGCAGGAACTATATGCACCAAGCCCAACGATCAGCCACAGAGgtacattcagaattatgatttggtttgttatcctatatatatctataaagttcatcgccactaagtgtagtcaatgctatttctctcctctcattaagtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctctc