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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTGCTTCAGCATCAATGCAAAAGgtattagcactccacaagtccacattacattttgtatcagcttagtttatgcaactataaacaagttcaggcaatcagtgaaaaatatcatgtgggaaag...

Basic information

species Oryza sativa
transcript LOC_Os01g49310.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29622013|gb|CB627024.1|CB627024
EST:     GATTTGCTTCAGCATCAATGCAAAAG                         GACTTGGGTTATCCATTCTCTGCAAAAACTGAACAGTTAGTGACTTCATCA
genomic: GATTTGCTTCAGCATCAATGCAAAAGgtattagcac ... ttttccacagGACTTGGGTTATCCATCCTCTGCAAAAACTGAACAGTTAGTGACTTCATCA
EST: gi|218487953|gb|FG943628.1|FG943628
EST:     GATTTGCTTCAGGGATCAATGCAAAAG                         GACTTGGGTTATCCATTCTCTGCAAAAACTGAACAGTTAGTGACTTCATCA
genomic: GATTTGCTTCA-GCATCAATGCAAAAGgtattagcac ... ttttccacagGACTTGGGTTATCCATCCTCTGCAAAAACTGAACAGTTAGTGACTTCATCA
EST: gi|86891181|gb|CI305955.1|CI305955
EST:     GATTTGCTTCAGCATCAATGCAAAAG                         GACTTGGGTTATCCATCCTCTGCAAAAACTGAACAGTTAGTGACTTCATCA
genomic: GATTTGCTTCAGCATCAATGCAAAAGgtattagcac ... ttttccacagGACTTGGGTTATCCATCCTCTGCAAAAACTGAACAGTTAGTGACTTCATCA