1 5' 3' | 2 5' 3' | 3 5' 3' |
AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgttctgctcacaagaatattgcagatgaattaccaatctatagttttcttcaaatgcactaatttaatttgcttaataccgtgcactacatt...
species | Oryza sativa |
transcript | LOC_Os01g48760.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATEST: gi|88334302|gb|CI642547.1|CI642547
genomic: GCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
EST: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATEST: gi|88555184|gb|CI485426.1|CI485426
genomic: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
EST: TTGTGGGGAACGCATCCAAG GTGAGACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATEST: gi|88349798|gb|CI634333.1|CI634333
genomic: TTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
EST: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCEST: gi|88491247|gb|CI428519.1|CI428519
genomic: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTC
EST: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATEST: gi|88317589|gb|CI672171.1|CI672171
genomic: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
EST: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAACAGCTEST: gi|88477298|gb|CI414569.1|CI414569
genomic: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCT
EST: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATEST: gi|88523154|gb|CI450957.1|CI450957
genomic: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
EST: ACGCATCCAAG GTGGAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGGGCTCTCATATEST: gi|88542108|gb|CI471416.1|CI471416
genomic: ACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
EST: AACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATEST: gi|88458963|gb|CI555644.1|CI555644
genomic: AACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
EST: AAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATEST: gi|88442145|gb|CI560386.1|CI560386
genomic: AAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
EST: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATEST: gi|88577442|gb|CI674029.1|CI674029
genomic: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
EST: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCAEST: gi|88308803|gb|CI654086.1|CI654086
genomic: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCA
EST: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAEST: gi|25799413|gb|CA755374.1|CA755374
genomic: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGA
EST: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATEST: gi|88210949|gb|CI212589.1|CI212589
genomic: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
EST: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG ATGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATEST: gi|88283283|gb|CI404729.1|CI404729
genomic: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
EST: AAAAGAAAACANTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAEST: gi|88524045|gb|CI451929.1|CI451929
genomic: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAA-Ggtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATA
EST: AAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATEST: gi|13165563|gb|AU174360.1|AU174360
genomic: AAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
EST: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATEST: gi|88366550|gb|CI556334.1|CI556334
genomic: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
EST: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATEST: gi|86417819|gb|CI032028.1|CI032028
genomic: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
EST: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCC--- -----A-AGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATEST: gi|88448381|gb|CI555236.1|CI555236
genomic: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
EST: CTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATEST: gi|88408609|gb|CI686112.1|CI686112
genomic: CTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
EST: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTEST: gi|88514546|gb|CI442052.1|CI442052
genomic: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGT
EST: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATEST: gi|88290434|gb|CI665223.1|CI665223
genomic: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
EST: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCEST: gi|88441599|gb|CI554823.1|CI554823
genomic: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTC
EST: AACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATEST: gi|88536964|gb|CI464769.1|CI464769
genomic: AACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
EST: CTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATATEST: gi|88825494|gb|CI776059.1|CI776059
genomic: CTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
EST: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGEST: gi|86257033|gb|CI061796.1|CI061796
genomic: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGG
EST: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAG GTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
genomic: AAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgt ... ttcttgtcagGTGAAACAGATCACAAGAGCTTTTCAATTGGTAGATGGGGAGCTCTCATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGgtacttttgttctgctcacaagaatattgcagatgaattaccaatctatagttttcttcaaatgcactaatttaatttgcttaataccgtgcactacatt
- - - - - - - - - - AAAGAA
- - - - - - - - - - AAGAAA