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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaattcaaacgtattgtatttcgccctgattgctccctgacatttgtaacctagttctagatattaatcatactgattgaccgctaataagtg...

Basic information

species Oryza sativa
transcript LOC_Os01g47660.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g47660.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G126928_T01 (Zea mays), 5'ss of exon 3
GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaattcaaacgtattgtatttcgccctgattgctccctgacatttgtaacctagttctagatattaatcatactga-ttgaccgctaataagtg--
||||||| |||||||| |||||||||| |||||||||||||||||| | || ||||||||||||||||      |||     || || | |||    |    || |   ||    ||   | ||  | |  |  ||       ||||  |  | ||   |       
GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAGgtacgtctgtttcttcgatactgcacttctttttagcagcacatcgag--ctgctgc-tacatgtgaaccttgccatccctgagctctctgccggtcgcccaa

upper sequence: LOC_Os01g47660.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AC230013.2_FGT007 (Zea mays), 5'ss of exon 3
GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgta---ctagaaattcaaacgtattgtatttcgccctgattgctccctgacatttgtaacctagttctagatattaatcatactgattgaccgctaataagtg---
|||||||||||||||| |||||||||| |||||||||||||| ||| | || |||||||||||||||   ||      | | |||     | ||| ||    |  ||| |   |||| || ||||| |  | |    ||| |     || ||     ||    | ||   
GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGTCAGGTCCTGGCCATCAACGAGgtatgtctctgctctgatacggcacttttttagcatcaagggctgct--acatgtg-aaccttg--ccatcctttagttgc-ttgtttagtgccttgcgactgcga

upper sequence: LOC_Os01g47660.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S56_243V6.3 (Physcomitrella patens), 5'ss of exon 3
GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaattcaaacgtattgtatttcgccctgattgctccctga----catttgtaacctagttctagatattaatcatactga--ttgaccgctaataagtg
||||||||||||||||||| ||||||||||||||    |||||||  | || || ||||| ||||||   |   ||       |   | ||  ||  |||        | |    || ||| | |  ||| | | | |    |   | |||   ||  | || | |    
GTACTTCCTGAGGAAGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtggttgtctgaaaactttttcagcgttgaaactatagtaaacatcacttgcagc--agtccgaaagagggttagaattgaagctgttccctcaca----

upper sequence: LOC_Os01g47660.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ38689 (Selaginella moellendorffii), 5'ss of exon 3
GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaattcaaacgtattgtatttcgccctgattgctccctgacatttgtaacctagttctagatattaatcatactgattgaccgctaataagtg
|||||||||  | ||||| |||||||||||||||    |||||||||| ||||| ||||||||||||    || |||   | | || | | |   |  ||      ||| |||  ||  | ||     | ||  ||  | | || |                  
GTACTTCCTTCGCAAGCTCAAGAAGGTGAAGAAGTCTCACGGCCAGATCCTCGCTATCAACGAGgta----aagttctttctttttctttcttttctcgag-----ccttacaagtgagaact----ttggaacttcgtgacacag------------------

upper sequence: LOC_Os01g47660.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ31458 (Selaginella moellendorffii), 5'ss of exon 3
GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaattcaaacgtattgtatttcgccctgattgctccctgacatttgtaacctagttctagatattaatcatactgattgaccgctaataagtg
|||||||||  | ||||| |||||||||||||||    |||||||||| ||||| ||||||||||||    || |||   | | || | | |  ||  |||           |   || |   |  | | ||  ||  | | || |                  
GTACTTCCTTCGCAAGCTCAAGAAGGTGAAGAAGTCTCACGGCCAGATCCTCGCTATCAACGAGgta----aagttctttctttttctttctttcctcgatgctctagccttacaagtgag--aactttggaacttcgtgacacag------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8527716|gb|AU092531.1|AU092531
EST:     CGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCG
genomic: CGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGC-AACCCAACCACGATCAAGAACTATGGCATCTGGCTGCG
EST: gi|86910759|gb|CI294772.1|CI294772
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|55408379|gb|CV720755.1|CV720755
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88342764|gb|CI640097.1|CI640097
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88576648|gb|CI670793.1|CI670793
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88294407|gb|CI667381.1|CI667381
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88394948|gb|CI607675.1|CI607675
EST:     AGCTGAAGGAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88327272|gb|CI645049.1|CI645049
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|58586171|gb|CF984479.1|CF984479
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAC                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88398681|gb|CI598646.1|CI598646
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88424004|gb|CI689702.1|CI689702
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCACCCACGATCAACAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|33663958|gb|CF294925.1|CF294925
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         GTCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|38480555|gb|CF964644.1|CF964644
EST:     CGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: CGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|58690556|gb|CK079243.1|CK079243
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88315282|gb|CI611946.1|CI611946
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88743134|gb|CI766642.1|CI766642
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88385715|gb|CI566577.1|CI566577
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|33684522|gb|CF312761.1|CF312761
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88347489|gb|CI637429.1|CI637429
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88398693|gb|CI598658.1|CI598658
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88371069|gb|CI597546.1|CI597546
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTACGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|86855775|gb|CI269102.1|CI269102
EST:     GAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: GAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88302033|gb|CI667879.1|CI667879
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88974957|gb|CI023220.1|CI023220
EST:     AAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|8404434|gb|AU091788.1|AU091788
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|2311805|gb|C27960.1|C27960
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|11025940|gb|AU162541.1|AU162541
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|218491808|gb|FG954124.1|FG954124
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAGCGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|218486350|gb|FG969949.1|FG969949
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88316067|gb|CI618943.1|CI618943
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|86828911|gb|CI280706.1|CI280706
EST:     CCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: CCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88471016|gb|CI408287.1|CI408287
EST:     GCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: GCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88350432|gb|CI653876.1|CI653876
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|15852890|gb|BI805686.1|BI805686
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|38478666|gb|CF962799.1|CF962799
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88325950|gb|CI649801.1|CI649801
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|58594085|gb|CF992393.1|CF992393
EST:     AGCTGAAGAGGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88325640|gb|CI648077.1|CI648077
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88328319|gb|CI651330.1|CI651330
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|218499852|gb|FG954107.1|FG954107
EST:     AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
EST: gi|88988355|gb|CI037633.1|CI037633
EST:     AAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT
genomic: AAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 70 (upstream exon), 74 (downstream exon)
Score: 37

GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaa ... gccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGTTACCAGAGCAGAACCGGTTACCACAACATGTACAAGGAGTACCGTGACA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGgtactagaaattcaaacgtattgtatttcgccctgattgctccctgacatttgtaacctagttctagatattaatcatactgattgaccgctaataagtg

- - - - - - - AGCTGA
- - - - - - - - CTGAAG
- - - - - - - -  TGAAGA
- - - - - - - - -  AAGAAG
- - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - -  CAGATG