1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAAGTTGTTGATACGACTGGTGCCGGTGACACTTTCACCTCAGCTTTTGCTGTAGCTCTAGTTGAGGGTAAACCTAAGGAAGAGTGCATGAGATTTGCTGgtactgaaagcaccctctcctcgtcatttgattgcaattgatttcttgttcttcaacattagcatactttgcttgaggcttcaatttccaatttttaatttcag
species | Oryza sativa |
transcript | LOC_Os01g47550.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTAGCTCTAGTTGAGGGTATACCTAAGGAAGAGTGCATGAGATTTGCTG CTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGCEST: gi|27554267|gb|CA998167.1|CA998167
genomic: TGTAGCTCTAGTTGAGGGTAAACCTAAGGAAGAGTGCATGAGATTTGCTGgtactgaaag ... ttaatttcagCTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGC
EST: TGTAGCTCTAGTTGAGGGTAAACCTAAGGAAGAGTGCATGAGATTTGCTG CTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGCEST: gi|13165430|gb|AU174227.1|AU174227
genomic: TGTAGCTCTAGTTGAGGGTAAACCTAAGGAAGAGTGCATGAGATTTGCTGgtactgaaag ... ttaatttcagCTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGC
EST: AGGAAGAGTGCATGAGATTTGCTG CTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGCEST: gi|33678571|gb|CF306810.1|CF306810
genomic: AGGAAGAGTGCATGAGATTTGCTGgtactgaaag ... ttaatttcagCTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGC
EST: TGTAGCTCTAGTTGAGGGTAAACCTAACGAAGAGTGCATGAGATTTGCTG CTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGC
genomic: TGTAGCTCTAGTTGAGGGTAAACCTAAGGAAGAGTGCATGAGATTTGCTGgtactgaaag ... ttaatttcagCTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTTGTTGATACGACTGGTGCCGGTGACACTTTCACCTCAGCTTTTGCTGTAGCTCTAGTTGAGGGTAAACCTAAGGAAGAGTGCATGAGATTTGCTGgtactgaaagcaccctctcctcgtcatttgattgcaattgatttcttgttcttcaacattagcatactttgcttgaggcttcaatttccaatttttaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA