Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTGGTGGAGTTTTCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggcagtgacttatcactccctttttatctgtccactattcctagtcatatatatcttcttactgctgttttgtaaaactgtaaccctattcctc...

Basic information

species Oryza sativa
transcript LOC_Os01g46926.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86849404|gb|CI299631.1|CI299631
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|55431330|gb|CV728679.1|CV728679
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|88729958|gb|CI753573.1|CI753573
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGGTTTTCCATCCAAACATCAACAGCAACGGGAG
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGG-TTTTCCATCCAAACATCAACAGCAACGGGAG
EST: gi|27577520|gb|CB000215.1|CB000215
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|86834009|gb|CI340148.1|CI340148
EST:     CTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: CTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|55438244|gb|CV732417.1|CV732417
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|38471522|gb|CF955653.1|CF955653
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|89168597|gb|CI038449.1|CI038449
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|33671124|gb|CF299363.1|CF299363
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|38565753|gb|CK085206.1|CK085206
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|88745084|gb|CI768444.1|CI768444
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|163920365|gb|EG711740.1|EG711740
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|25798773|gb|CA754667.1|CA754667
EST:     TTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|117238030|gb|CT862028.1|CT862028
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|55431332|gb|CV728680.1|CV728680
EST:     AGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: AGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|58594014|gb|CF992322.1|CF992322
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|58671444|gb|CK060130.1|CK060130
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|3759930|gb|C97188.1|C97188
EST:     TCCTAGTTACCATCCACTTCCCTNCTGATTATCCCTTCAAACCACCCAAG                         GTGCCGTTTCG-ACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|58591111|gb|CF989419.1|CF989419
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|2310784|gb|C26939.1|C26939
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|88377844|gb|CI637978.1|CI637978
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|88346503|gb|CI637349.1|CI637349
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|66913588|gb|CX100436.1|CX100436
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|88570585|gb|CI661958.1|CI661958
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|58591699|gb|CF990007.1|CF990007
EST:     GCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|88730304|gb|CI753918.1|CI753918
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|58597143|gb|CK007671.1|CK007671
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|86418310|gb|CI032519.1|CI032519
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|88308997|gb|CI654419.1|CI654419
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|88984239|gb|CI020156.1|CI020156
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|89190159|gb|CI392209.1|CI392209
EST:     TATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|163928906|gb|EG709759.1|EG709759
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|88762126|gb|CI771682.1|CI771682
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|88718883|gb|CI742393.1|CI742393
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAA
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAA
EST: gi|88294636|gb|CI602356.1|CI602356
EST:     TCCTAGTTACCATCCACTTCCCTCATGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|86898783|gb|CI296080.1|CI296080
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|88692482|gb|CI736057.1|CI736057
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|58603424|gb|CK013952.1|CK013952
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|55438246|gb|CV732418.1|CV732418
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|27577273|gb|CA999967.1|CA999967
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCCATCCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|55413329|gb|CV725705.1|CV725705
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|38476445|gb|CF960578.1|CF960578
EST:     GGCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|87019040|gb|CI297348.1|CI297348
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|3759748|gb|C97006.1|C97006
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|58591683|gb|CF989991.1|CF989991
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|38472298|gb|CF956429.1|CF956429
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|55408408|gb|CV720784.1|CV720784
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|58672051|gb|CK060737.1|CK060737
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|58588732|gb|CF987040.1|CF987040
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 163

GCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTGGTGGAGTTTTCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGCATTTGCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTGGTGGAGTTTTCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggcagtgacttatcactccctttttatctgtccactattcctagtcatatatatcttcttactgctgttttgtaaaactgtaaccctattcctc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactccc