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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCACGTCTCCATGCCAGCAATCGTCGAGAAGTCCATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGGgtgggtgcccacgccccttgtgctcatgtcttcccgtagccctacaccgcattgctccgcaattaatccctcttcacacgcactggtgcccactggcccgcgctcgagctaacgctgtcaaactgtctcgtggccag

Basic information

species Oryza sativa
transcript LOC_Os01g45550.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88246655|gb|CI246504.1|CI246504
EST:     CCATGTTTAGCCTGG                         GATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
genomic: CCATGTTTAGCCTGGgtgggtgccc ... tcgtggccagGATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
EST: gi|58601059|gb|CK011587.1|CK011587
EST:     CATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGG                         GATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
genomic: CATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGGgtgggtgccc ... tcgtggccagGATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
EST: gi|86501615|gb|CI144248.1|CI144248
EST:     CATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGG                         GATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
genomic: CATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGGgtgggtgccc ... tcgtggccagGATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
EST: gi|86592538|gb|CI253219.1|CI253219
EST:     ATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGG                         GATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
genomic: ATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGGgtgggtgccc ... tcgtggccagGATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
EST: gi|86505347|gb|CI147980.1|CI147980
EST:     CCTGGGGATGGCCATGTTTAGCCTGG                         GATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
genomic: CCTGGGGATGGCCATGTTTAGCCTGGgtgggtgccc ... tcgtggccagGATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
EST: gi|86494150|gb|CI136783.1|CI136783
EST:     CATCTCCATTCTCTCGGACGCAGCCCTGGGGATGGCCATGTTTAGCCTGG                         GATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
genomic: CATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGGgtgggtgccc ... tcgtggccagGATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
EST: gi|87015309|gb|CI275499.1|CI275499
EST:     CATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGG                         GATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
genomic: CATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGGgtgggtgccc ... tcgtggccagGATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
EST: gi|86521327|gb|CI161533.1|CI161533
EST:     CATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGG                         GATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
genomic: CATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGGgtgggtgccc ... tcgtggccagGATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
EST: gi|88225519|gb|CI225435.1|CI225435
EST:     TCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGG                         GATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
genomic: TCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGGgtgggtgccc ... tcgtggccagGATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
EST: gi|87027442|gb|CI272207.1|CI272207
EST:     CATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGG                         GATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
genomic: CATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGGgtgggtgccc ... tcgtggccagGATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
EST: gi|58656945|gb|CK045625.1|CK045625
EST:     CATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGG                         GATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
genomic: CATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGGgtgggtgccc ... tcgtggccagGATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
EST: gi|86482461|gb|CI125094.1|CI125094
EST:     CATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGG                         GATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
genomic: CATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGGgtgggtgccc ... tcgtggccagGATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
EST: gi|58675818|gb|CK064505.1|CK064505
EST:     GGGATGGCCATGTTTAGCCTGG                         GATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
genomic: GGGATGGCCATGTTTAGCCTGGgtgggtgccc ... tcgtggccagGATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
EST: gi|87027635|gb|CI274199.1|CI274199
EST:     CATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGG                         GATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG
genomic: CATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGGgtgggtgccc ... tcgtggccagGATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCG